NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss68756307           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP01839162
RefSNP(rs#)rs11240777
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756307|allelePos=65|len=129|taxid=9606|alleles='G/A'|mol=Genomic
 GCTCTGCTTG CAGGGTTGGG TAGTGGAAGG TTTCAGAGTT GATAGCATTT
 GGATTGGGCT TTAA
 R
 GTATGACTAG GAGC
 TTACCAGATA GAGAAGTGGT GTTTGGACGT TGTATGAGAA GGAAACACAA

  Submitted Frequency for ss68756307 back to top
There is no frequency submission for ss68756307.


  dbSNP summary of Genotypes for ss68756307 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.79166669
A=0.20833333G/G=0.58333331
A/G=0.41666666
Pr(chiSq=1.551,df=1)
=0.251
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.60000002
A=0.40000001A/G=0.48888889
G/G=0.35555556
A/A=0.15555556
Pr(chiSq=0.015,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090G=0.53333336
A=0.46666667A/G=0.44444445
G/G=0.31111112
A/A=0.24444444
Pr(chiSq=0.517,df=1)
=0.479
Genotype
Freq.
HapMap-YRI120120A=0.75000000
G=0.25000000A/A=0.55000001
A/G=0.40000001
G/G=0.05000000
Pr(chiSq=0.267,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss68756307 back to top
There is no individual genotype data for ss68756307.