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Submitted SNP(ss) Details: ss68756311           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP06128885
RefSNP(rs#)rs9442372
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756311|allelePos=65|len=129|taxid=9606|alleles='A/G'|mol=Genomic
 AAGACAGAGA TGTGGGTCCC AGAGTATCAT GCACCTCAGG GGGCGACAAG
 CAGGCCGTAG TCCC
 R
 AGACCTCGAA TGTG
 ACCTTATTTA GAAGAAGGGG CTTTGCAGGG GGTTACGTCA GGGTCTCAGG

  Submitted Frequency for ss68756311 back to top
There is no frequency submission for ss68756311.


  dbSNP summary of Genotypes for ss68756311 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.60000002
A=0.40000001A/G=0.53333336
G/G=0.33333334
A/A=0.13333334
Pr(chiSq=0.741,df=1)
=0.403
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.77777779
A=0.22222222G/G=0.62222224
A/G=0.31111112
A/A=0.06666667
Pr(chiSq=0.450,df=1)
=0.527
Genotype
Freq.
HapMap-JPT9090G=0.77777779
A=0.22222222G/G=0.57777780
A/G=0.40000001
A/A=0.02222222
Pr(chiSq=1.111,df=1)
=0.294
Genotype
Freq.
HapMap-YRI120120A=0.50833333
G=0.49166667A/G=0.64999998
A/A=0.18333334
G/G=0.16666667
Pr(chiSq=5.413,df=1)
=0.020
Genotype
Freq.

  Submitted individual genotype for ss68756311 back to top
There is no individual genotype data for ss68756311.