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Submitted SNP(ss) Details: ss68756322           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP07120521
RefSNP(rs#)rs9442380
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756322|allelePos=65|len=129|taxid=9606|alleles='T/C'|mol=Genomic
 AGGAGTGCTG CTCAGGTGTT TTGTAGAGAG TCCCTCAGTT TGGGTTTGTC
 TGATGTTTTT CTCA
 Y
 GATTATACTC TGGG
 GTTATGGGTT TTGCGAAGAG GAGGATGGAG TCCTAAGTTC CAGAGCCCAG

  Submitted Frequency for ss68756322 back to top
There is no frequency submission for ss68756322.


  dbSNP summary of Genotypes for ss68756322 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.94166666
T=0.05833333C/C=0.89999998
C/T=0.08333334
T/T=0.01666667
Pr(chiSq=3.498,df=1)
=0.100
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.64444447
T=0.35555556C/C=0.44444445
C/T=0.40000001
T/T=0.15555556
Pr(chiSq=0.728,df=1)
=0.403
Genotype
Freq.
HapMap-JPT9090C=0.61111110
T=0.38888890C/T=0.42222223
C/C=0.40000001
T/T=0.17777778
Pr(chiSq=0.561,df=1)
=0.479
Genotype
Freq.
HapMap-YRI120120C=0.90833336
T=0.09166667C/C=0.81666666
C/T=0.18333334
Pr(chiSq=0.107,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss68756322 back to top
There is no individual genotype data for ss68756322.