NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss68756325           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP13330455
RefSNP(rs#)rs6684820
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756325|allelePos=65|len=129|taxid=9606|alleles='G/A'|mol=Genomic
 ATCTGAGGAG GAAGGCCGTG GGTTTCTCAT AAATGCCCTC GTCAGGTTGA
 GGAAGTTCCC TTCT
 R
 TTCCTAATTG GTTA
 AGTGTTTTTT GTTAATATCC TAGAAGGATG TTGAAATCTG TCAAATGCTT

  Submitted Frequency for ss68756325 back to top
There is no frequency submission for ss68756325.


  dbSNP summary of Genotypes for ss68756325 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.73333335
A=0.26666668G/G=0.58333331
A/G=0.30000001
A/A=0.11666667
Pr(chiSq=3.256,df=1)
=0.100
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.85555553
G=0.14444445A/A=0.75555557
A/G=0.20000000
G/G=0.04444445
Pr(chiSq=1.638,df=1)
=0.251
Genotype
Freq.
HapMap-JPT9090A=0.88888890
G=0.11111111A/A=0.80000001
A/G=0.17777778
G/G=0.02222222
Pr(chiSq=0.450,df=1)
=0.527
Genotype
Freq.
HapMap-YRI120120A=0.67500001
G=0.32499999A/G=0.48333332
A/A=0.43333334
G/G=0.08333334
Pr(chiSq=0.620,df=1)
=0.439
Genotype
Freq.

  Submitted individual genotype for ss68756325 back to top
There is no individual genotype data for ss68756325.