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Submitted SNP(ss) Details: ss68756328           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP03979905
RefSNP(rs#)rs3766186
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756328|allelePos=65|len=129|taxid=9606|alleles='C/A'|mol=Genomic
 CACGCAAGGA CCCCCGAACC GTACCATCTG AGGAGAGGTG CAAGGGGACA
 CCACACCTGG TGCC
 M
 AGGTCCTCCA GCTG
 GCACCGTGCC TCCGTCCCAC CAGCTCACCT GTGCTCCGCC CGAAAGCCTG

  Submitted Frequency for ss68756328 back to top
There is no frequency submission for ss68756328.


  dbSNP summary of Genotypes for ss68756328 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU224224C=0.91071427
A=0.08928572C/C=0.82142860
A/C=0.17857143
Pr(chiSq=0.184,df=1)
=0.752
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.74418604
A=0.25581396C/C=0.55813956
A/C=0.37209302
A/A=0.06976745
Pr(chiSq=0.022,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172C=0.88372093
A=0.11627907C/C=0.76744187
A/C=0.23255815
Pr(chiSq=0.326,df=1)
=0.584
Genotype
Freq.
HapMap-YRI226226C=0.83185840
A=0.16814159C/C=0.68141592
A/C=0.30088496
A/A=0.01769911
Pr(chiSq=0.646,df=1)
=0.439
Genotype
Freq.
HAPMAP-ASW9898C=0.83673471
A=0.16326530C/C=0.67346936
A/C=0.32653061
Pr(chiSq=0.559,df=1)
=0.479
Genotype
Freq.
HAPMAP-CHB8282C=0.81707317
A=0.18292683C/C=0.65853661
A/C=0.31707317
A/A=0.02439024
Pr(chiSq=0.151,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHD170170C=0.82352942
A=0.17647059C/C=0.65882355
A/C=0.32941177
A/A=0.01176471
Pr(chiSq=1.511,df=1)
=0.251
Genotype
Freq.
HAPMAP-GIH176176C=0.93181819
A=0.06818182C/C=0.86363637
A/C=0.13636364
Pr(chiSq=0.062,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.93333334
A=0.06666667C/C=0.87777776
A/C=0.11111111
A/A=0.01111111
Pr(chiSq=1.033,df=1)
=0.317
Genotype
Freq.
HAPMAP-MEX100100C=0.97000003
A=0.03000000C/C=0.94000000
A/C=0.06000000
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286C=0.91958040
A=0.08041958C/C=0.85314685
A/C=0.13286713
A/A=0.01398601
Pr(chiSq=1.478,df=1)
=0.251
Genotype
Freq.
HAPMAP-TSI176176C=0.92613637
A=0.07386363C/C=0.85227275
A/C=0.14772727
Pr(chiSq=0.080,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss68756328 back to top
There is no individual genotype data for ss68756328.