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Submitted SNP(ss) Details: ss68756330           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP05176793
RefSNP(rs#)rs6667923
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756330|allelePos=65|len=129|taxid=9606|alleles='C/A'|mol=Genomic
 GGCCCAGGTC CCACTCCAAA GTCCTGACCG ACACACTCCT TCTCACAGCT
 GCTTCCCAGC CTAG
 M
 CTGTACTGGA AACT
 CCCCAGGCCC TTCCCGGCAT AGCCAGAGCC ACCGCCTTCA GAGGCCTCCC

  Submitted Frequency for ss68756330 back to top
There is no frequency submission for ss68756330.


  dbSNP summary of Genotypes for ss68756330 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.94166666
A=0.05833333C/C=0.88333333
A/C=0.11666667
Pr(chiSq=0.026,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.98888886
A=0.01111111C/C=0.97777778
A/C=0.02222222
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120C=0.79166669
A=0.20833333C/C=0.60000002
A/C=0.38333333
A/A=0.01666667
Pr(chiSq=1.577,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss68756330 back to top
There is no individual genotype data for ss68756330.