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Submitted SNP(ss) Details: ss68756334           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP13342508
RefSNP(rs#)rs2765033
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68756334|allelePos=65|len=129|taxid=9606|alleles='T/C'|mol=Genomic
 CCAGGGGCCG GATTCCCAAC GGGCCGACGG AAGTGCGGGC TCAAGACTAC
 GGAAGTGACG TATC
 Y
 GGCAACGGAA GTGG
 AGTTACGTGG AAGGCGGAAG CGTCTAGAGC TATTTCCCCC GTTTTTGCTA

  Submitted Frequency for ss68756334 back to top
There is no frequency submission for ss68756334.


  dbSNP summary of Genotypes for ss68756334 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.96666664
T=0.03333334C/C=0.93333334
C/T=0.06666667
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.94444442
T=0.05555556C/C=0.88888890
C/T=0.11111111
Pr(chiSq=0.017,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090C=0.80000001
T=0.20000000C/C=0.64444447
C/T=0.31111112
T/T=0.04444445
Pr(chiSq=0.035,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120C=0.98333335
T=0.01666667C/C=0.96666664
C/T=0.03333334
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss68756334 back to top
There is no individual genotype data for ss68756334.