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Submitted SNP(ss) Details: ss80750557           
Submitter
HandleKRIBB_YJKIM
Submitter SNP IDKHS1000330
RefSNP(rs#)rs175174
Submitted Batch IDKHB2007_2_FP-TDI
Submitted DateNov 26, 2007
Publication Cited16376517
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodFP-TDI
Ascertainment Samplesize158
PopulationKHP_Korean
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80750557|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 CCACTGCCCC TGGGTCAACA ACTGCATCGG GCGTCGAAAC TATCGCTACT TCTTCCTGTT
 CCTGCTGTCA CTCAGTGCAC ACATGGTGGG CGTCGTGGCC TTCGGCCTGG TCTACGTGCT
 GAACCACGCT GAGGGGCTGG GAGCCGCGCA CACCACCATC ACGTATCCTT GGTTCCTGTG
 GGCCTCATTG CAGAGGCGAT GTGGACCGGG GACACGTTCA CCAGGGAGAT TGAGCCTCAG
 AAGGCTTGGT TCCTGCCCAG GGATCCCCAG TGGGCAGGTG GCCGTCCCTA GGTTGGGAGG
 R
 GGTTTGTCCA CAGGCACCTG CTCTGTGCTG CTGCGATGGG GTCTGCGGTG TCCTGGCCTG
 CACCGTTGGC CTTAACGGGC TAGCATGGCT GTCATGTGTG TGGCCGGCCT CTTCTTCATC
 CCTGTCATTG GCCTCACTGG CTTCCATGTG GTGCTGGTCA CTCGGGGGCG CACCACCAAC
 GAGCAGGTGC AGACCCCATG GGGGATGGGT GGCCCCAAAG GGCCGAGAGA GTTGGGGCTG
 CATGGGGACA GGGTGGGGGC TGGGGCACCC TTGCCTGAGG TAGCTTGTGC AGCTGTGTTG

  Submitted Frequency for ss80750557 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
KHP1
EAST ASIA
158G=0.70886099
A=0.29113901
G/G=0.50632900
A/G=0.40506300
A/A=0.08860800
KHB2007_2_FP-TDIKRIBB_YJKIM


  dbSNP summary of Genotypes for ss80750557 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
KHP_Korean
EAST ASIA
158158G=0.70886075
A=0.29113925G/G=0.50632912
A/G=0.40506330
A/A=0.08860759
Pr(chiSq=0.027,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss80750557 back to top
There is no individual genotype data for ss80750557.

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