NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss80750560           
Submitter
HandleKRIBB_YJKIM
Submitter SNP IDKHS1000331
RefSNP(rs#)rs175175
Submitted Batch IDKHB2007_2_FP-TDI
Submitted DateNov 26, 2007
Publication Cited16376517
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodFP-TDI
Ascertainment Samplesize174
PopulationKHP_Korean
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80750560|allelePos=168|len=468|taxid=9606|alleles='G/T'|mol=Genomic
 CAAGGTCAAG CTTAGTGACA ACGGGCTGAA GGCTGGCCTG GGCCGTAGCA AGGTGGGCGC
 CTGGGCTTAG GGATGGGCTG GCAGTCAGGC CCTTGGATGG GGAAACAGGC AGGTTGGTGG
 GGGCCTAGAA GAGGTGGATG GGGCAGACAG AGCCGTAGAC AGATTCT
 K
 GGGAGGGGGC TAGGTCCCAG GCTGAATCCC TAGTGAAGCC CTGCCCCTCA TCCAAGCCCC
 ACACACCACT GACCCCGCTC CCTCCCAGTC CAAGGGCAGC CTGGACCGGC TGGATGAGAA
 GCCACTGGAC TTGGGGCCAC CACTGCCCCC CAAGATAGAG GCTGGCACGT TCAGCAGTGA
 CCTGCAGACC CCGCGCCCAG GCAGTGCTGG TGAGGTTGGG GCAGCCACGA CTAGGGAGGG
 ATATGGGTTG ACCCTCCTCT GACCTCAGTC TGACAGTGGT CTGCATCCCC AGAGAGTGCC

  Submitted Frequency for ss80750560 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
KHP1
- EAST ASIA 		174G=0.87931001
T=0.12069000
G/G=0.75862098
G/T=0.24137899
T/T=0.00000000
KHB2007_2_FP-TDIKRIBB_YJKIM


  dbSNP summary of Genotypes for ss80750560 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
KHP_Korean
- EAST ASIA 		174174G=0.87931037
T=0.12068965G/G=0.75862068
G/T=0.24137931
Pr(chiSq=0.372,df=1)
=0.584		Genotype
Freq.

  Submitted individual genotype for ss80750560 back to top
There is no individual genotype data for ss80750560.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement