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Submitted SNP(ss) Details: ss80753377           
Submitter
HandleKRIBB_YJKIM
Submitter SNP IDKHS1000007
RefSNP(rs#)rs440
Submitted Batch IDKHB2007_2_AFFYMETRIX_MIP
Submitted DateNov 26, 2007
Publication Cited16376517
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFFYMETRIX_MIP
Ascertainment Samplesize172
PopulationKHP_Korean
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80753377|allelePos=51|len=101|taxid=9606|alleles='C/T'|mol=Genomic
 GCCTGAGCAA CATAGCAAGA CCCCATCTCT ACAAAAAATT AAAAATCAGC
 Y
 GGGTGGCATG CACCTGTAGT CCCAACTACT TGGGAGGTTA AGGCAGGAGG

  Submitted Frequency for ss80753377 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
KHP1
EAST ASIA
172T=0.79651201
C=0.20348801
T/T=0.63953501
C/T=0.31395301
C/C=0.04651200
KHB2007_2_AFFYMETRIX_MIPKRIBB_YJKIM


  dbSNP summary of Genotypes for ss80753377 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
KHP_Korean
EAST ASIA
172172T=0.79651165
C=0.20348836T/T=0.63953489
C/T=0.31395349
C/C=0.04651163
Pr(chiSq=0.085,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss80753377 back to top
There is no individual genotype data for ss80753377.

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