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Submitted SNP(ss) Details: ss8236436           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011530.10_1018945
RefSNP(rs#)rs5951417
Submitted Batch ID10-APR-2003c
Submitted DateApr 17, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHRX_NA17119
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:XSNP51152-237a24.p1kposition:494quality:48sequence:XSNP51152-322j08.p1kposition:451quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8236436|allelePos=401|len=801|taxid=9606|alleles='G/A'|mol=Genomic
 agttttgacc tcaatgaccc tcagaaaagt ccctgagaat ccccaagggt ctgtggacca
 tgttttgagg accactgCTC TTAAACTTTT GCAAAGGGCC AGCCCTCCCA GGACGCAGAA
 TGTAGCTACT CCCACATTTG GGAGGAGAGG TGAGGTCTCC TTCAAACAGG GCAATTTGCC
 TTCCTTTTTG GAACCCGAGA TGGACTTTTT ATTTCCTTGC AGAACTGAAG GCATCTGGCT
 TGGGAGCACG ATTATTCTCC ACTCACCTTT AAACTGCCTC AGCTATTACT AAGTCTCTGG
 CAGTGATATG TTGATTATGT GAATTTAAAG CCCACAGGAG CCAGAGGAAT GACAGATCAG
 TTTCTCTTAA ATGAGAAATA AAATCCAGGA GCCTGGCAGC
 R
 GGACATACGG CTCTCACTCC TGCTGACCTT TGATGTCACT CGGGTAGAAT GACTGCTTCT
 AGGCCAGATG GCATGTAGCT TAAACGGAGA TGTCTCAACC TGTTTCCTTG TATTAATTGT
 GCACATTGAT ACTCCTCCAT TGTGTAGTCC ATAATTCTTC ATCGTCAACC TCATTTGGAT
 TTTTTTTTGA GGGGAAGCTG AGCTCAAGCA GGCCTCCACG AATTCAAGCT ATTTCAAAAG
 CTCCAAACCC AAACCTTTTT CTATCCAATC ACTGTTATAG GCTGACAGAC ACTGAATCTC
 CCTTCTGTCA ATTGAATGTA AGTCTAGCAA CTTTTAAGAG CAATGAGATT GAAGGAAAGG
 GCCTTCTTTC ACCTCTTTGC CCTAAAGGAG GTGGCTGAAT

  Submitted Frequency for ss8236436 back to top
There is no frequency submission for ss8236436.


  dbSNP summary of Genotypes for ss8236436 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		8484G=0.78571427
A=0.21428572G/G=0.69047618
A/G=0.19047619
A/A=0.11904762
Pr(chiSq=7.923,df=1)
=0.005		Genotype
Freq.
HapMap-JPT8686G=0.76744187
A=0.23255815G/G=0.72093022
A/A=0.18604651
A/G=0.09302326
Pr(chiSq=23.508,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss8236436 back to top
There is no individual genotype data for ss8236436.

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