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Submitted SNP(ss) Details: ss8236445           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011530.10_1070481
RefSNP(rs#)rs5951426
Submitted Batch ID10-APR-2003c
Submitted DateApr 17, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHRX_NA17119
Ascertainment Samplesize5
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:XSNP51152-399n24.q1kposition:548quality:32sequence:XSNP51152-302a13.p1kposition:-148quality:39sequence:XSNP51152-521i10.p1kposition:-109quality:27sequence:XSNP51152-580f12.q1kposition:395quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8236445|allelePos=401|len=801|taxid=9606|alleles='G/T'|mol=Genomic
 GAGGATATGG CATTTGATGG TTTACTGGTG ATGATGGAGA TGGAGGTGGC GCATAATGCT
 GTTTCTGAGG TATAATATGA TGAGGGGACG ATACCGCTGG TTGACTTTGA CACTCAGGAT
 AATAGTCGGG AGGTGTTGGC TTCTTAGCAC CAGAATCTGA GTTATTCTGA ATATGATCAA
 CTGTTAAATT GCCATGTTTT CTCGTAAAAA TACTAACGGT TTCCCACTGG ATGGGAAAAG
 GCAGACTTAG AGATAGTTCT GGGGGAGGAG CCTGGATATC CTTATGTGGC TGATTATGTT
 GCTCTTGTAG CATATGTTGC ACAGACGGTA GTGACACCAT GGTGTGCTGT TCTGGTGGAA
 TATAGCTTAG ATGGTCCCTG TCTTGCAGTC TTTTAGGGAT
 K
 TCAGAGATTT CAGTTTGTGG CGGAGCAATA TGAGGACGAA CTTTTTCAAG CGAAGCGCTG
 GTAACTTGTT TTCGAGCTCT CTTATGGCGG CGTTTGATAT GAGCCTGTAA GCTTTTCTGA
 GACAAGTATG TTCTCTTGCA CTGCTGAACA ATACTACACA TGAAGACAGA ACCTCGTTTA
 TGCGCCTCAA TTCTCAGCAC AGGATAACGA CAGCGCGGAC ATACTTTATA TCCGACTTTG
 TCATATAAAT TAGCACAGTG ATAGCAAAAA GCATGCTTGC ACGGAATTAT TCGCCCATAG
 ATTTTAATAG GCAAATCACA TTTGTCACAG AAATGAATTG GTAAATCATC CTTTTCACCT
 ATGATGTTTA TCTTAATGTC CCCCCAACGG TAACCAGGAA

  Submitted Frequency for ss8236445 back to top
There is no frequency submission for ss8236445.


  dbSNP summary of Genotypes for ss8236445 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU226226G=0.92035401
T=0.07964602G/G=0.87610620
G/T=0.08849557
T/T=0.03539823
Pr(chiSq=17.753,df=1)
=0.001		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686T=0.51162791
G=0.48837209T/T=0.34883720
G/T=0.32558140
G/G=0.32558140
Pr(chiSq=5.222,df=1)
=0.025		Genotype
Freq.
HapMap-JPT172172G=0.54069769
T=0.45930234G/G=0.41860464
T/T=0.33720931
G/T=0.24418604
Pr(chiSq=22.226,df=1)
=0.001		Genotype
Freq.
HapMap-YRI226226T=0.76106197
G=0.23893805T/T=0.67256635
G/T=0.17699115
G/G=0.15044248
Pr(chiSq=29.779,df=1)
=0.001		Genotype
Freq.
HAPMAP-ASW9898T=0.63265306
G=0.36734694T/T=0.48979592
G/T=0.28571430
G/G=0.22448979
Pr(chiSq=7.275,df=1)
=0.010		Genotype
Freq.
HAPMAP-CHB8282G=0.71951222
T=0.28048781G/G=0.60975611
G/T=0.21951219
T/T=0.17073171
Pr(chiSq=8.531,df=1)
=0.005		Genotype
Freq.
HAPMAP-CHD170170T=0.50588238
G=0.49411765T/T=0.35294119
G/G=0.34117648
G/T=0.30588236
Pr(chiSq=12.806,df=1)
=0.001		Genotype
Freq.
HAPMAP-GIH176176G=0.76704544
T=0.23295455G/G=0.68181819
G/T=0.17045455
T/T=0.14772727
Pr(chiSq=24.074,df=1)
=0.001		Genotype
Freq.
HAPMAP-LWK180180T=0.77222222
G=0.22777778T/T=0.68888891
G/T=0.16666667
G/G=0.14444445
Pr(chiSq=24.923,df=1)
=0.001		Genotype
Freq.
HAPMAP-MEX100100G=0.69000000
T=0.31000000G/G=0.57999998
G/T=0.22000000
T/T=0.20000000
Pr(chiSq=11.797,df=1)
=0.001		Genotype
Freq.
HAPMAP-MKK286286T=0.58741260
G=0.41258740T/T=0.46853146
G/G=0.29370630
G/T=0.23776224
Pr(chiSq=37.119,df=1)
=0.001		Genotype
Freq.
HAPMAP-TSI176176G=0.82386363
T=0.17613636G/G=0.77272725
T/T=0.12500000
G/T=0.10227273
Pr(chiSq=36.907,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss8236445 back to top
There is no individual genotype data for ss8236445.

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