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Submitted SNP(ss) Details: ss8236458           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011530.10_1118556
RefSNP(rs#)rs5951437
Submitted Batch ID10-APR-2003c
Submitted DateApr 17, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHRX_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:XSNP51152-416d14.p1kposition:183quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8236458|allelePos=401|len=801|taxid=9606|alleles='T/C'|mol=Genomic
 TTTGGATTAT ATTTGGCCCA TGTGTCAAAT AAGAGAGTTG AATTAGATGC CTCTCACCTT
 GAAATGTGGG TATAATACGA GGCCAGCTAG GTCCAGCCCT TAAATAAAAA ACTCCCCTGG
 TCTAGTCAGG TGGGTATCAG GCCGACATAA TAAGACTCAC CTCTGGTTTG ATACTGTAAA
 GATCATAAAA CAGTAATTAC TTTTATGTCT CCATCTAACC CCCCAACTCC AAGCAGTACC
 AGAGTGAGGG TCCGATAAAT TACTAATTAC TGCTCTTGGA TTGCTTGTAA TAAGACTTAG
 CCCTTGAATC ACTGTGGAAG AGAATCACAT GTCCGAACAG CAGCCTGTGT CTGGATATAA
 TAACAACCAA CCATTATACC TGTATAGTGC TTTCAGCTTT
 Y
 CTAAGTATTT CACATATGTT TTCTCATTTT ACCCAGAATA GAACAGGGGT GATGATGAAG
 ATGGTCTGGA AGCACATTTT CAAGGAACAC GAGTTGAGGT TTTCAATCTT AGGCAAAATG
 AAGGGCTGCA TTTTTCCTCA GGGATGAGAT TGCACTTACG TTGTTCTTCC TGCATTTCAT
 TAGCTTCTCA CTTCCAACTT GAAAGAAGAC TGTTCAAGTT GAAAGGCAAT GAAGACACTG
 AGAATGTGGC AGCAAATGCT GAATGTAAAG TTGAAAAAAA ATGGAAGGCT TCCCTTGGAA
 TTGAAAAAAA AATAATGGTC TTGGCACTCT AATCATTGGG TTTGGGTATT GAAACAGCCT
 GCAGATTGTC AAAACCAGGG AAATTGCATG AATCTGAAAC

  Submitted Frequency for ss8236458 back to top
There is no frequency submission for ss8236458.


  dbSNP summary of Genotypes for ss8236458 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU224224T=0.97767860
C=0.02232143T/T=0.95535713
C/T=0.04464286
Pr(chiSq=0.003,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686T=0.82558137
C=0.17441860T/T=0.76744187
C/C=0.11627907
C/T=0.11627907
Pr(chiSq=15.287,df=1)
=0.001		Genotype
Freq.
HapMap-JPT172172T=0.87209302
C=0.12790698T/T=0.82558137
C/T=0.09302326
C/C=0.08139535
Pr(chiSq=29.233,df=1)
=0.001		Genotype
Freq.
HapMap-YRI220220T=0.84090906
C=0.15909091T/T=0.77272725
C/T=0.13636364
C/C=0.09090909
Pr(chiSq=26.448,df=1)
=0.001		Genotype
Freq.
HAPMAP-ASW9898T=0.81632656
C=0.18367347T/T=0.73469388
C/T=0.16326530
C/C=0.10204082
Pr(chiSq=10.169,df=1)
=0.003		Genotype
Freq.
HAPMAP-CHB8282T=0.92682928
C=0.07317073T/T=0.90243900
C/C=0.04878049
C/T=0.04878049
Pr(chiSq=16.812,df=1)
=0.001		Genotype
Freq.
HAPMAP-CHD170170T=0.92941177
C=0.07058824T/T=0.90588236
C/C=0.04705882
C/T=0.04705882
Pr(chiSq=34.963,df=1)
=0.001		Genotype
Freq.
HAPMAP-GIH176176T=0.86931819
C=0.13068181T/T=0.80681819
C/T=0.12500000
C/C=0.06818182
Pr(chiSq=17.808,df=1)
=0.001		Genotype
Freq.
HAPMAP-LWK176176T=0.74431819
C=0.25568181T/T=0.67045456
C/C=0.18181819
C/T=0.14772727
Pr(chiSq=32.946,df=1)
=0.001		Genotype
Freq.
HAPMAP-MEX100100T=0.99000001
C=0.01000000T/T=0.98000002
C/T=0.02000000
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HAPMAP-MKK284284T=0.69014084
C=0.30985916T/T=0.59859157
C/C=0.21830986
C/T=0.18309858
Pr(chiSq=46.443,df=1)
=0.001		Genotype
Freq.
HAPMAP-TSI172172T=0.95348835
C=0.04651163T/T=0.93023258
C/T=0.04651163
C/C=0.02325581
Pr(chiSq=19.454,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss8236458 back to top
There is no individual genotype data for ss8236458.

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