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Submitted SNP(ss) Details: ss8309293           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011333.5_1004035
RefSNP(rs#)rs6010605
Submitted Batch ID11-APR-2003a
Submitted DateApr 17, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 10
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45079-559c02.q1cposition:64quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8309293|allelePos=401|len=801|taxid=9606|alleles='C/T'|mol=Genomic
 TGTTTGGGGG GCACCCACTG CTGCCCCAGA CACCAAGCAA GCACCAGCTG TGTCCAAAAC
 ATACAGTCAC tgtcttggcc cgttttgtgc tgctgtaaca gaatgccaca gactgggtaa
 tttaatacag aacagaaatt tatttcctca aagttttgga ggctgggaag tccaagagca
 aggggccatc aggtcagggc ctggtctctg cttccacgat ggcaccttga ccaccgtgtc
 ctcacgtggt cagagagagc CCACTCCCAG GAGCCCTTTT AATAGAGCAG aacactgctg
 cgctgcggtt aagtttccaa cacgtgaact tcggaggtga cacattcaga tcatagcaGT
 CACTCTAGGC AGAGTGTCTG ATGTGGTTTT AAAATACGTT
 Y
 ACAGACTggc cgggcactgt agctcacgtc tgtaatccca acagtttggg aggccaaggt
 gggtggatca cctgaggtca ggagttcaag accagcctca ccaacatggt gaaaccccat
 ctctactaaa aatacaaaat tagccaggtg gtgcatgcct gtaatcccag ctactcggga
 ggccgaggct ggagaatcgc ttgaatccag gaggtggagg ttacagtgag tcgagatcat
 gccattgcac tccagcctgg gcaacaagag cgaaactctg tctcaaaaaa taaaataaaa
 taaaataCAT TCACAAGgcc gggcactgtg gctcacgcct gtaatcccag ctacttggga
 gactgaggca ggagaatcgc ttataacctg ggaggtggag

  Submitted Frequency for ss8309293 back to top
There is no frequency submission for ss8309293.


  dbSNP summary of Genotypes for ss8309293 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU224224C=0.99553573
T=0.00446429C/C=0.99107140
C/T=0.00892857
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090C=0.98888886
T=0.01111111C/C=0.97777778
C/T=0.02222222
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI224224C=0.95535713
T=0.04464286C/C=0.91964287
C/T=0.07142857
T/T=0.00892857
Pr(chiSq=2.962,df=1)
=0.100
Genotype
Freq.
HAPMAP-ASW9898C=0.98979592
T=0.01020408C/C=0.97959185
C/T=0.02040816
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.93333334
T=0.06666667C/C=0.87777776
C/T=0.11111111
T/T=0.01111111
Pr(chiSq=1.033,df=1)
=0.317
Genotype
Freq.
HAPMAP-MKK286286C=0.91958040
T=0.08041958C/C=0.83916086
C/T=0.16083916
Pr(chiSq=0.169,df=1)
=0.752
Genotype
Freq.
HAPMAP-TSI174174C=0.99425286
T=0.00574713C/C=0.98850572
C/T=0.01149425
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss8309293 back to top
There is no individual genotype data for ss8309293.

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