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Submitted SNP(ss) Details: ss8309310           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011333.5_1047502
RefSNP(rs#)rs6010621
Submitted Batch ID11-APR-2003a
Submitted DateApr 17, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45079-432g08.p1cposition:395quality:42

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8309310|allelePos=401|len=801|taxid=9606|alleles='T/G'|mol=Genomic
 CTCCAGTCTT CTCCGCAGCC AGGGCAGCAG GGTTTGCTGT CTGTCCTGCA GGCAGATGAG
 GAGTCAGGGC TGGGGCCTGT GTGGGGGCTC TCCTGAGCGC ACAGCCGCCG AGGTGGAGCG
 TGTTCTGCCT GAGCGCCGAC CTGGTCGGGG GAATCCCAGT TGCTTCCAGG TGGAGCCACT
 GTCCTCAGCG TAATGCTCAA GGCTCTGGCC TGGCTCCTCG GCCACCCTGC ACCCTCAGGG
 TCCCCTCCTG TAGCTTCTGC TGCCCCATCA CTGTCACTCT CCAAAGCTTT GGGGACTCTG
 CCCAGAGCCA CCGCCTCCCA GAAGCCCCTG ACAACCTCTT GACGACCCCC TAGTGACCCC
 ATCCCTCCCC TCTGACGGCG GCCCCTGCTC TGAGGCGGCT
 K
 CTTTTCCTCG GTGCTGTTCT CGTGCTGGCC AGGCCTCCTC TCCCCACCTG GAGGCTCCTG
 AGGGCGGAGG CCTCTCACCT CCAATGCTGG CGTCCCCTGG AGGGCTGAAT TTGTTTCCGA
 GGGAAGGAAA CTTCCACAGT TGTTGCCTTC AGTTCCAAAG CTGCAGCCTG ATTTCCCCCT
 CCAGGCTCGA GCCTGTTTTC TTCTCGGCAG CTACATCTTT GACCAGTGTC GTCCCCCCTC
 AGGCCCGAGC CTGCCTTCTT CTCCTCAGTT CCCAAAGCTG CAGTCTGGTC CCCCCGCCAG
 GCTCGAGCCT GCCTTCTTCT CCTCGGCAGC TACATCTTTG AGCTGTTTGC TGAAGCCCAG
 ATCACGTTTC AGACCAAGGG CTGCATCCTG GACTCGCTGG

  Submitted Frequency for ss8309310 back to top
There is no frequency submission for ss8309310.


  dbSNP summary of Genotypes for ss8309310 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU118118G=0.74576271
T=0.25423729G/G=0.54237288
G/T=0.40677965
T/T=0.05084746
Pr(chiSq=0.312,df=1)
=0.584
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686T=0.63953489
G=0.36046511G/T=0.48837209
T/T=0.39534885
G/G=0.11627907
Pr(chiSq=0.151,df=1)
=0.752
Genotype
Freq.
HapMap-JPT8484T=0.64285713
G=0.35714287G/T=0.42857143
T/T=0.42857143
G/G=0.14285715
Pr(chiSq=0.187,df=1)
=0.752
Genotype
Freq.
HapMap-YRI112112G=0.97321427
T=0.02678571G/G=0.94642860
G/T=0.05357143
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss8309310 back to top
There is no individual genotype data for ss8309310.