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Submitted SNP(ss) Details: ss8309311           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011333.5_1047728
RefSNP(rs#)rs2297438
Submitted Batch ID11-APR-2003a
Submitted DateApr 17, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA10470
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45079-432g08.p1cposition:169quality:45sequence:20SNP45079-820e04.q1cposition:135quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8309311|allelePos=401|len=801|taxid=9606|alleles='G/A'|mol=Genomic
 CTGCACCCTC AGGGTCCCCT CCTGTAGCTT CTGCTGCCCC ATCACTGTCA CTCTCCAAAG
 CTTTGGGGAC TCTGCCCAGA GCCACCGCCT CCCAGAAGCC CCTGACAACC TCTTGACGAC
 CCCCTAGTGA CCCCATCCCT CCCCTCTGAC GGCGGCCCCT GCTCTGAGGC GGCTTCTTTT
 CCTCGGTGCT GTTCTCGTGC TGGCCAGGCC TCCTCTCCCC ACCTGGAGGC TCCTGAGGGC
 GGAGGCCTCT CACCTCCAAT GCTGGCGTCC CCTGGAGGGC TGAATTTGTT TCCGAGGGAA
 GGAAACTTCC ACAGTTGTTG CCTTCAGTTC CAAAGCTGCA GCCTGATTTC CCCCTCCAGG
 CTCGAGCCTG TTTTCTTCTC GGCAGCTACA TCTTTGACCA
 R
 TGTCGTCCCC CCTCAGGCCC GAGCCTGCCT TCTTCTCCTC AGTTCCCAAA GCTGCAGTCT
 GGTCCCCCCG CCAGGCTCGA GCCTGCCTTC TTCTCCTCGG CAGCTACATC TTTGAGCTGT
 TTGCTGAAGC CCAGATCACG TTTCAGACCA AGGGCTGCAT CCTGGACTCG CTGGACCAGA
 TCATCCAGCA CCTGGCAGGA CGTGAGTGCT GGCACGGGGT CTTTGGTGCG GGCAAATGTG
 GCGTAGGGGG TGCAGCAGGC CTCCATCTTG GCAGTCAGGG CTCCCCTGGC CGTCACCTGG
 CCGTCAGCAG GAACAGGCCC ACAGAACCTC ATCTTCTGAT CGGGGCGTGG AGGCGTTAGT
 GCCACTTGCC AGCTGCCGTA GAGCCTGTCC CAGTTCTGCA

  Submitted Frequency for ss8309311 back to top
There is no frequency submission for ss8309311.


  dbSNP summary of Genotypes for ss8309311 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.76106197
G=0.23893805A/A=0.55752212
A/G=0.40707964
G/G=0.03539823
Pr(chiSq=1.608,df=1)
=0.251
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.62790698
A=0.37209302A/G=0.51162791
G/G=0.37209302
A/A=0.11627907
Pr(chiSq=0.387,df=1)
=0.584
Genotype
Freq.
HapMap-JPT170170G=0.67647058
A=0.32352942G/G=0.45882353
A/G=0.43529412
A/A=0.10588235
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226A=0.97787613
G=0.02212389A/A=0.95575219
A/G=0.04424779
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898A=0.89795917
G=0.10204082A/A=0.79591835
A/G=0.20408164
Pr(chiSq=0.123,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHB8282G=0.78048778
A=0.21951219G/G=0.65853661
A/G=0.24390244
A/A=0.09756097
Pr(chiSq=3.405,df=1)
=0.100
Genotype
Freq.
HAPMAP-CHD170170G=0.74117649
A=0.25882354G/G=0.56470591
A/G=0.35294119
A/A=0.08235294
Pr(chiSq=0.545,df=1)
=0.479
Genotype
Freq.
HAPMAP-GIH176176A=0.83522725
G=0.16477273A/A=0.69318181
A/G=0.28409091
G/G=0.02272727
Pr(chiSq=0.091,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180A=0.97222221
G=0.02777778A/A=0.94444442
A/G=0.05555556
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100A=0.76999998
G=0.23000000A/A=0.66000003
A/G=0.22000000
G/G=0.12000000
Pr(chiSq=7.178,df=1)
=0.010
Genotype
Freq.
HAPMAP-MKK286286A=0.95104897
G=0.04895105A/A=0.90209788
A/G=0.09790210
Pr(chiSq=0.036,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176A=0.81250000
G=0.18750000A/A=0.67045456
A/G=0.28409091
G/G=0.04545455
Pr(chiSq=0.402,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss8309311 back to top
There is no individual genotype data for ss8309311.

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