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Submitted SNP(ss) Details: ss8310933           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011333.5_691583
RefSNP(rs#)rs6011734
Submitted Batch IDCHR22_NA10470_extra
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR22_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:22SNP10470-67h07.q1kposition:399quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8310933|allelePos=201|len=1377|taxid=9606|alleles='G/T'|mol=Genomic
 GTATCCTGTT TTAAAAGATC TTTCTTATTC CGAGAGTAGA AATCGCGCCT CCTCCTGGTT
 CCTCCTGGTG CTTCCAGGCA CTTTTCGACA CTCCCAGGTG GATTCGTCTA GAGCTGATTT
 TGTTACAGCA CTGGGGAGGA CAGAGGACGG GGAGGACTCC AGCTTCACCT CTTCACAGAC
 CACCCCTGGT CGCCTGAGTC
 K
 TTCATTACAC AGCCAGCCCC TTGCAGAAGT TGAACGCCCT GGCTCTCGTG CTGTCCTAAG
 GCCCCTGTGT ATTTTGGGGT TTTTCAGATG CTCCAGTCTG TCCCGTTGAT GTGTCTGTTG
 TTCACAGGCG AGGGCTGTGC TGCTTAAATT ATTACAGATT TCTTTAAGAT GTCGATGCCA
 GATGGGCTGG TCCTCTTTTG TATTATTCCC CCAGAATTTT CCTGGCTCTC TTTGCTTATT
 TCATTGTTCA GTGAACTGTA GAATCGACTT ATCCGTTTAA CCTAAACAAT TCAGTTGGTG
 TTTTTACTGG AACTGCATTC GCTTTATAGA TATACTCGGG AACAGATGAT GTCTTCATGA
 TGTTGAATCT TCTCATCCAA AAACACAGCC ATCCTGCCTT TTGTTCACAG GGCCTGTTGT
 GGCCCTCAGT ACAGTGTGGG GATGGTCTCT TCCTACAGAC CCACTCGGTT CTCCTTCATC
 CCTACGTATG TCCTCTTTTT TGTTGCTATT ATAAGTGAGG TGTTTTCTCT CATTACAGCT
 TCTACCTCAT TATTTTCACA CTGGCCGTGA CCGCTGTGTA TGACTTTTGT ACCCAGTTTT
 CTTTCTCAAT TATCTTCTTT GTGGTTTTCT TGGATTTTCC AGGTTTACAG TGACATCACC
 TGCAAATAAA CACTTCACCT TCGGCTTTTC AGTCTTGATC ACTCAAATTT CTTTTTCTTG
 TCTAATGGTG TTGGTGAATA CTCCAGAATT TTGTCAGAGA ACAGTGGCAG TAGCAGATAC
 TCTCATTTTC TTCTTGGCCT AACAGAAGTG CTTCTAGCAT TTGACCATTA AAGTGCTGTC
 CTGGAAGCGG AGACAGGTGC ATTTTGTCAT GTGGTAGTGA AGTCCATCCA CTCTTCTTTT
 ATTAGATTTA AAACACCAAG AATGCACATT AAACAAGCTC TAGTGCTGTT ATGGACATAA
 TGAAATGACT GTGCGTCTTG GAGCTATTAA TTGTAGGATA TCCCTAAATA CTGGATGATT
 GCTGCATCCG TCGAAAATCT GACGTGGTCG CTGAATTCTC GTTATCCATG CCATGTGCTG
 CAGAGCTCAG CTTGCTGACA TTTTGTTTTG GATTTCGCAC TGATGCTTCT AAATAAGACT
 GTCACAGTTT TCTTTATAGT GTTTGGAACC TCAGTT

  Submitted Frequency for ss8310933 back to top
There is no frequency submission for ss8310933.


  dbSNP summary of Genotypes for ss8310933 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI224224T=0.73660713
G=0.26339287T/T=0.52678573
G/T=0.41964287
G/G=0.05357143
Pr(chiSq=0.743,df=1)
=0.403
Genotype
Freq.
HAPMAP-ASW9898T=0.84693879
G=0.15306123T/T=0.71428573
G/T=0.26530612
G/G=0.02040816
Pr(chiSq=0.027,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176T=0.96022725
G=0.03977273T/T=0.93181819
G/T=0.05681818
G/G=0.01136364
Pr(chiSq=5.773,df=1)
=0.020
Genotype
Freq.
HAPMAP-LWK180180T=0.69999999
G=0.30000001G/T=0.48888889
T/T=0.45555556
G/G=0.05555556
Pr(chiSq=2.421,df=1)
=0.150
Genotype
Freq.
HAPMAP-MEX100100T=0.98000002
G=0.02000000T/T=0.95999998
G/T=0.04000000
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286T=0.79020977
G=0.20979021T/T=0.61538464
G/T=0.34965035
G/G=0.03496503
Pr(chiSq=0.426,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss8310933 back to top
There is no individual genotype data for ss8310933.

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