NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss8342942           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_206379
RefSNP(rs#)rs2009825
Submitted Batch IDCHR13_NA07340_extra
Submitted DateNov 17, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR13_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S6A_2-170g04.q1kposition:624quality:44

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8342942|allelePos=222|len=457|taxid=9606|alleles='C/T'|mol=Genomic
 GAATGATTAA TAGGTTAATC TTGTGATTCT AATTTTAAAA GTGTAAGTGG GATTTTGATT
 TAGATTTAAG TTGAAAGGTT TAATACACTC TTATTAGCTC CGTTGCCCAG GCTGGTGTTC
 AATGGCGAGA TCTCGGCTCA CTGCTACTTC TGCCTCCCAG ATTCAAGCAA TTCTCCTGCC
 TCAGCCTCCT GAATAGCTGG GATAACAGGT GCCCGCCACC A
 Y
 ACCCAGCTAA TTTTTTAATT TTTAGTAGAG ATGCGGTTTT GCCATGTTGG CCAGGCTGGT
 CCTGACCTCA GGGGATCCAC CTGCCTCAGC CTCCCAAAGT GCTGGGATTA CAGGTGTGAG
 CCACCGCGCC CGGCCAGATT ACCCATATTT AGAAGTTTAA GTATTAGATA TACAAGAATT
 ATGTAAATAC CCAATGGTTT TTGTTAATCA GACAAGTGAA CCATTTGAAA ATGAA

  Submitted Frequency for ss8342942 back to top
There is no frequency submission for ss8342942.


  dbSNP summary of Genotypes for ss8342942 back to top
No sufficient data to compute Hardy-weinberg probability for ss8342942.


  Submitted individual genotype for ss8342942 back to top
There is no individual genotype data for ss8342942.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement