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Submitted SNP(ss) Details: ss8343677           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_22806951
RefSNP(rs#)rs4815153
Submitted Batch IDCHR1_NA17019
Submitted DateNov 14, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR1_NA17019
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1SNP2-47c07.p1kposition:765quality:32

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8343677|allelePos=348|len=1354|taxid=9606|alleles='C/T'|mol=Genomic
 CATCTGTAGA GTGCCCAACA TCCTCAAAGT TTGCAGTAGC GTCACCTCCA GCTTCTTCCT
 TTAAGACTTC TTCTGTTAAG ACTTCTTTCC CACCAGGATG CTCAGGTGTT CAATTTCTTC
 CTGGTTCAGT CTTGAGAGGG TGTATGTGTC AAGGAATTTA TCCATTTCTT GTAGGTTTTC
 TAGTTTATGT ACAGAGAGGT GTTTATAATA TTTTCTGATG ATTGTTCATA TTTCTCTGGA
 GTCAGTGGTA ATAATCCCCC CATGTATCTG TGTTTATTTC AATCTTCTAT CTTTTCTTCC
 TTATTAGTCT AGCTGGTGGT CAATCTATTT TATTATTTTA TCCAAAA
 Y
 GCCAGCTCTT GGATTCATTC ATATTTTGAA TGTTGTTTTG TTGTTGTTGT TGTTGTTGTT
 GTTGTTGTTG TTTCTATTTT CTTCAGTTCT TCTCTGAGCT TGGTTATTTC TTGTCTTCTG
 CTAGCTCTGA GGTTTGTTTG CTCTTGGTTC TCTAGTTCTT TTAGTTCTGA TGTTAGGGTG
 TTGATTTGAG AACTCCCTAG CTTTTTGATG TGGGCATTTA GTACTATAAA TTTCCCTCTT
 AACACTGCCT TAGTTGCATC CCAGAGATTC TGGTGTTGTA TCATTATTCT CATTCATCTC
 AAAGAACTTC TTGATGTCTC CCTTAATTTC ATTATTTACC CATAAGTCAT TCAGGAGCAG
 GTTATTCAAT TTCCATGTAA TTGTATGGTT TTGAGTGAAT TTCTTTGTCT TGATTTCCAG
 TTTGACTGTG CTGTGGTCTG AGAGACTATT TGTTATAATT TCAGTTCTTT TGCATTTGCT
 GAGGAGTGTT TCATTTCCAA TTATGTGATC AATTTTAGAG TAACTGCCAT GTGGCAATGA
 GAAGAATGTA TTTCTGTTGA TTTGGAGTGG AGAGTTCTGT AGATGTCTAT CAGGTCCACT
 TGATCCAGAG CTGAGTTCAA GTCCTGACTA TCTCTGTTGA TTTTCTGTCT CGATGATCGG
 TCTAATATTG TCAGTGGGGT GTTACAGTCT CCTACTATTA TTGTGTGGGA GTCTAATTCT
 CTGTGAAGGT CTCTAACAAC TTGCTTTATG AATCTGAGTG CTCCTGTGTT GGGAGCATAC
 ATATTTAGGA AAGTTAGTTC TTGTTCAGTT GAACCCTTTA CCATTATGTA ACTCCCATCT
 TTGTCTTCTT TTATCTTTGT TGGTTTAAAG TCTATTTTGT CAGAAAATAG GATTGCAAAC
 CTCTGTAAAA CATATTTTCT TATAAAATCC TTCAGCAATG TGGAAAAAGC CCACAAGGCA
 GCTAGTTTTC AGGAACTCGG GAAAGTCTAG GGTGAGGCTT CTGAGC

  Submitted Frequency for ss8343677 back to top
There is no frequency submission for ss8343677.


  dbSNP summary of Genotypes for ss8343677 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU118118T=0.80508476
C=0.19491525T/T=0.62711865
C/T=0.35593221
C/C=0.01694915
Pr(chiSq=1.061,df=1)
=0.317		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8888T=0.62500000
C=0.37500000T/T=0.43181819
C/T=0.38636363
C/C=0.18181819
Pr(chiSq=1.359,df=1)
=0.251		Genotype
Freq.
HapMap-JPT8686T=0.73255813
C=0.26744187T/T=0.53488374
C/T=0.39534885
C/C=0.06976745
Pr(chiSq=0.003,df=1)
=1.000		Genotype
Freq.
HapMap-YRI114114T=0.69298244
C=0.30701753C/T=0.47368422
T/T=0.45614034
C/C=0.07017544
Pr(chiSq=0.730,df=1)
=0.403		Genotype
Freq.

  Submitted individual genotype for ss8343677 back to top
There is no individual genotype data for ss8343677.

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