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Submitted SNP(ss) Details: ss8343933           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_23455842
RefSNP(rs#)rs2983624
Submitted Batch IDCHR6_NA17119_extra
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR6_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:6S17_2-468f09.p1kposition:753quality:27

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8343933|allelePos=857|len=1568|taxid=9606|alleles='T/C'|mol=Genomic
 ACTTGTGTAC CAGATCATAT TCAGGACTGT GGATGACCAG GTTCTAGACA CAGAGCATCA
 TTTCTATTAT CTGTTGCTGA TGCCAACCTT CCCTTCCCGA ATGTTATGGG ATCTTTGGGG
 TGTTGCTTTT CTGGCTGGAA ACCTCTATGG CTGGTGGCAC CTTTGCCCAA GTTCTTGTCC
 TGTTTCTGGA AAGAATGAGG TACACAGACA AGTGGAGGGT GAGCAAGATG AAGAGGAGCT
 TCACTGAGTG TTAGAACAGC TCAGAGGAAA CCCCGTGGTG GGTAGCTCCT CTCTGTAGGC
 AGTTCATCCA GAGTGTTCAG CTCTCAGCAG AGAGGGTAGC TCCTCTCTGC AGCTGGTCAT
 CTGGTAGTCT TCCCAGATCT CAGCAGAGAG AACAGCTCCT TTCTGCAGCT GGTTGTCTGT
 CCTCTGCTCT CTCTGAGTCT GGGGGTTTCT ATGGTCTTCA GAGGGGGAAG TGTGTGCTGA
 TTGGTCTGTG GTCAGCCATG GGTGGGCCCA GCAATAAGTA CAAGTTCCCC CTCTGGTCTG
 CAGGACTGGC AGCCCAGCCC AGAGGCCTCA GGCCCTCCCC AGCCTGGGAC CCACCCCCTT
 CTGCCCAGGA GCCTGTCTGC CTTCCACCAC CCTTCACAGC CCAGGCTGTT CATGCCAAGG
 GGCGCCCGTA GGCCAGTGCT GAGCTGTCCT CAGCACCCCC CTTGGCCTCC CTCCGTGCTT
 CTCGGTGCCC AAAGATTGGA GGGGGCCGAA GCAAGAGGGG GCCAGAGTAT TACAGCTGCC
 CTGAGCATGC GTGCACCCGA CTGGATTGCG ACAACTCCGG GGTTCTGCCC CAGCCTTGCT
 CCATGATCAG AGCAGG
 Y
 GCCAGGAGCG GGGAGAGGCC AGGCAGTGTA AGCAGGCATC CCAAGCCTGT GGGGGGCAGG
 GAGAAGTTCC CAGGCCCTCA AGAGCACAGA GATGCCCAGG TCTACCCCTG GACCTGGGCA
 GCTGCAGCTG AATCCAGGGC CTCCTGCCTC CCACAACTCA GAAGCTGCGT GGCTCCTGCT
 TATCCTGGAG TCCTGGGCCC ACTTTCCTGC TGCAGCCGGC GTCTTGGCAG TGGCCACTCT
 CCATGTGCCG CTGCTGCCAT CACCACCAAC ACACCAACAC TCACCCGCGC GCGCGCACAC
 ACACACACAC ACACACAGAG TTAGTGGCTT AAAGTAAAAC GAACTCATTA TTTCTCACTA
 TTCTGCAACC TGTGCTGTGT TCTATTGGGG CAGGAATATT CTAGATAGCT ACTTTACTCA
 TGTGTTTGGC ACCTCCACTA GGATGGCTGA AACAATGGGG GGGCTGGCTA GGCATCCTTC
 TCATACTGCT CAGGGACTAG CCATGGGGCA AACTTGTAGA GTGATCAGTC ATCCTGGTTT
 GTCAAAGACT GTAGGCTTTC CTGGGATGTA GGCCTTTCAG TACTAAAACC AGGGAAATTT
 TGGCAAACCA AGATGTGTTG GTCATCCTAT ACTTGGACAT TCTCACAACA TGGTGCTTCC
 AAGGGAGTCA AAATTCTTAA TTGGCTCCTA AGAGGAAGAA GCAGAAGCTG C

  Submitted Frequency for ss8343933 back to top
There is no frequency submission for ss8343933.


  dbSNP summary of Genotypes for ss8343933 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.96666664
T=0.03333334C/C=0.93333334
C/T=0.06666667
Pr(chiSq=0.005,df=1)
=1.000		Genotype
Freq.
HapMap-YRI116116C=0.81034482
T=0.18965517C/C=0.63793105
C/T=0.34482759
T/T=0.01724138
Pr(chiSq=0.861,df=1)
=0.371		Genotype
Freq.

  Submitted individual genotype for ss8343933 back to top
There is no individual genotype data for ss8343933.

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