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Submitted SNP(ss) Details: ss8344384           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_24364704
RefSNP(rs#)rs6036793
Submitted Batch IDCHR6_NA17119_extra
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR6_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:6S17_2-355j04.p1kposition:-223quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8344384|allelePos=201|len=1006|taxid=9606|alleles='T/C'|mol=Genomic
 CCTTGCTAAT AAGCATGAGC AACTACTCGT AGAAAGGCAG CATGTTCCAT CTGTATCATA
 GCATTGTGAG TTAACTGAAG GGGGTCCTAG AGTTACCAGT GGACACAGCA TTTAGCCAGT
 CAGCAAACAT TGCTGAGCCA GGTTTGGAGA GATGCTCCTG CCCTCCACAG CTCACGACTC
 CCCACAGAGA CAGGCGGGTA
 Y
 ACAAATGACA GAGGCTAAGG GTCCATATGT ACTGTCACCA AACCAAACTC AGGTCCTCTT
 GCCCTGTGCA GCAAAACCAA ACACTGACAT CAGGACTGCA GCAACAGAAA CCCAGGCATT
 TATGGCAGAA CACCACGCAA GGAGAATCAG GCAGCTCAGG CTTGAGACCA AAGCTGCCCT
 TGCAGTTAAG TGTTTTTAAA GGAGGGGAGG CAGAGGTCAC AGGCCAAGTC ATCAATCAAT
 GACCAAAAAA GGCAGAACAT CTCCAAGTGG GGGTCCACAG GTTGTAGGTA GAGTTAAAGA
 TTTTCTGATT TGCGATAGGT TAAGGAAGGA ACATTTGTCT AGACTGGGGG TCAGCAGAAA
 AGAGTGTTAG CTCTGGCCTG TGGGCATGAC CTCCAGGCTC CTCAAGAAGA AACTGAGAGC
 AAGGAAAGGC AGGCAGACCT CACTCCTCAG TCCCCCTTAT ATGGGGTCCA CGTACCAGCA
 GGTCCATTTG TTGGGGGGTG TGGTTTTCTG AAAAACAACT CAGGGTCATA TGTTAACATG
 GTATCCCCTG TGACTTTAAC TTCCTTGGCT ATTGTTTTAA GCTACTGTTG CCTTCTTGCT
 TATCAAGTTG CTCATTTACT TGTCAGAGCT AGCTGGGTGT CTGGAATTTC CCTTGAAGGC
 ACTCAAGATT TTCCTTTATT TCCGCACTTA GGAGCTGGGG GATGGCCCCC CCTAAGAGGG
 GTCCCTGCTG TGTCTCGGCA CTGACGGCAA TGTGTACAAA GCAACAAGTG GTTCTGCTGC
 ATCCAAAGGA AACCTGGAAA AGTGT

  Submitted Frequency for ss8344384 back to top
There is no frequency submission for ss8344384.


  dbSNP summary of Genotypes for ss8344384 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU222222C=0.69819820
T=0.30180180C/C=0.49549550
C/T=0.40540540
T/T=0.09909910
Pr(chiSq=0.161,df=1)
=0.752
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.89534885
T=0.10465116C/C=0.79069769
C/T=0.20930232
Pr(chiSq=0.117,df=1)
=0.752
Genotype
Freq.
HapMap-JPT168168C=0.92857140
T=0.07142857C/C=0.85714287
C/T=0.14285715
Pr(chiSq=0.068,df=1)
=1.000
Genotype
Freq.
HapMap-YRI224224C=0.70089287
T=0.29910713C/T=0.52678573
C/C=0.43750000
T/T=0.03571429
Pr(chiSq=7.363,df=1)
=0.010
Genotype
Freq.
HAPMAP-ASW9696C=0.59375000
T=0.40625000C/T=0.56250000
C/C=0.31250000
T/T=0.12500000
Pr(chiSq=1.323,df=1)
=0.251
Genotype
Freq.
HAPMAP-CHB8282C=0.96341461
T=0.03658536C/C=0.92682928
C/T=0.07317073
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD168168C=0.92857140
T=0.07142857C/C=0.86904764
C/T=0.11904762
T/T=0.01190476
Pr(chiSq=0.884,df=1)
=0.371
Genotype
Freq.
HAPMAP-GIH176176C=0.73863637
T=0.26136363C/C=0.54545456
C/T=0.38636363
T/T=0.06818182
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.68333334
T=0.31666666C/C=0.45555556
C/T=0.45555556
T/T=0.08888889
Pr(chiSq=0.249,df=1)
=0.655
Genotype
Freq.
HAPMAP-MEX100100C=0.56999999
T=0.43000001C/T=0.41999999
C/C=0.36000001
T/T=0.22000000
Pr(chiSq=1.025,df=1)
=0.317
Genotype
Freq.
HAPMAP-MKK284284C=0.72887325
T=0.27112675C/C=0.54225349
C/T=0.37323943
T/T=0.08450704
Pr(chiSq=0.440,df=1)
=0.527
Genotype
Freq.
HAPMAP-TSI172172C=0.62790698
T=0.37209302C/T=0.55813956
C/C=0.34883720
T/T=0.09302326
Pr(chiSq=3.252,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss8344384 back to top
There is no individual genotype data for ss8344384.

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