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Submitted SNP(ss) Details: ss8347176           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_7514948
RefSNP(rs#)rs6038886
Submitted Batch IDCHR6_NA11321_extra
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR6_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S6A_2-418i08.p1kposition:469quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8347176|allelePos=201|len=1379|taxid=9606|alleles='C/T'|mol=Genomic
 AGGATTCCTA CCAAGGGAAC ATTTTGAAGT TGGAACTGAA GGCAGAGATA TGAGGTCCAG
 TTGATTTCAA AACAGTAGAA AATTATGAAA CCGCTTGGAC AATTAATGGC TTACCACTGT
 AGATCCATCT GGATCACACA CTGAAGTGTG CCCCTGCTAA GTGCACAGAG ATTTCTCTGG
 GTTTTTTGAG CATGCTTGTA
 Y
 ATCTGCTGAA GTGATTGGAG AAAAAAACAT AGACTAAGAA CATCAGTTAT AGTTTCAAAT
 TTGGTTAGTT TGTAAATTCT TTACTCCTTT TTATTTATTT ATTTTTTATT TTATTATTAT
 TGTACTTTAA GTTTTAGGGT GCATGTGCAC AATGTGCAGG TTTGTTACAT ATATATACAT
 GTGCCATGTT GGTGTACTGC ACCCATTAAC TTGTCATTTA GCATTAGGTA TATCTCCTAA
 TGCTATCCCT CCCCCTCCCC CCATCCCACA ACAGTCCCTG GAGTGTGATG TTCCCCTTCC
 TGTGTCCATG TGTTCTTGTT GTTCAATTCC CACCTATGAG TGAGAACATG CTGTGTTTGG
 GTTTTGTCCT CGTGATAGTT TGCTGAGAAT GATGATTTCC AGTTTCATCC ATGTCCCTGC
 AAAGGACATG AACTCATCAT TTTTTATGGC TGCATAGTAT TCTATGGTGT ATATGTGCCA
 CATTTTCTTA ATCCAGTCTA TCGTTGTTGG ACATTTGGGT TGGTTCCAAG TCTTTGGTAT
 TGTGAATAGT GCCGCAATAA ACATACGTGT GCATGTGTCT TTATACCAAC ATGATTTATA
 GTTCTTTGGG TATATACCCA GTAATGGGAT GGCTGGGTCA AATGGTATTT CTAGTTCTAG
 ATCCCTGAGG AATCGCCACA CTGACTTCCG CAATGGTTGA ACTAGTTTAC AGTCCCACCA
 ACAGTGTAAA AATGTTCCTA TTTCTCCACA TCCTCTCCAG CACCTGTTGT TTCCTGACTT
 TTTAATGATT GCCATTCTAA CTGGTGTGAG ATGGTATCTC ATTGTGGTTT TGATTTGCAT
 TTCTCTGATG GCCAGTGATG ATAACTATTT TTTCATGTGT TTTTTGGCTG CATAAATGTC
 TTCTTTTGAG ATGTGTCTTT CATATCCTTT GCCCACTTTT TGATGGGGTT GTCTGTTTTT
 TTCTTGTAAA TTTGTTTGAG TTCATTGTAG ATTCTGGATA TTAGCCCTTT GTCAGATGAG
 TAGGTTGTGA AAATTTTCTC CCATTCTGTA GGAGGTTGCC TGTTCACTCT GATGGTAGTT
 TCTTTTACTG TGCAGAAGCT CTTTAGTTTA ATTAGATCCC ATTTTTCAAT TTTGGCTTTT
 GTTGCCATTG CTTTTGGTGT TTTATTACTC TCCTTCTT

  Submitted Frequency for ss8347176 back to top
There is no frequency submission for ss8347176.


  dbSNP summary of Genotypes for ss8347176 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.81666666
T=0.18333334C/C=0.68333334
C/T=0.26666668
T/T=0.05000000
Pr(chiSq=0.719,df=1)
=0.403		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8888C=0.98863637
T=0.01136364C/C=0.97727275
C/T=0.02272727
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-JPT9090C=0.98888886
T=0.01111111C/C=0.97777778
C/T=0.02222222
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120C=0.89166665
T=0.10833333C/C=0.80000001
C/T=0.18333334
T/T=0.01666667
Pr(chiSq=0.156,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss8347176 back to top
There is no individual genotype data for ss8347176.

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