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Submitted SNP(ss) Details: ss8348382           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_10123783
RefSNP(rs#)rs6039764
Submitted Batch IDCHR1_NA17019
Submitted DateNov 14, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR1_NA17019
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1SNP2-168e07.p1kposition:435quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8348382|allelePos=201|len=939|taxid=9606|alleles='C/G'|mol=Genomic
 AGGCTGGCCC CGTATTTCCT CCTCTTCCTC AGTTTCCTCA TTCATGAAAT CAGCAGACAT
 TTTGGAGATT TACTTCAGCC CAGACTTTCT AAGACACTCA TAGTTAGGGG TTCCTGGTTT
 AAATAGATTG CGACAACTTA ACATGCAGCT TAACATGAAA CACAGATGGC AGAAAAATAA
 AAAGGTGCCT CTATCAGTTA
 S
 AAAGAAATTG GTTGGGCGCA GTGGCCCACG CCTGTAATCC CAGCACTTTG GGAGGCCGAG
 GCGGGTGGAT CACCTGAGGT CAGGAGTTGG AGACGAGCCT GGCCAACATG GTGAAACCCC
 ATCTCTACTA AAAGTACAAA AATTTGCCCG GTGTGGTGGT GGGCGCCTGT AATTCCAGCT
 ACTCAGGAGG CTGAGGCAGG AGAATCACTT GAATCCAGGA AGTGGAGGTT GCAGTGAGCC
 AAGATCATAG CACTGGACTC CAGCATGGGC GACAAGTGGG AGACTCCATC TCAAAAAAAA
 AAAAAAAGAA AGAAAGAAAA AGATTGGCTA GACCCTGTGT GTGGCATGAC ATCCTATTCC
 AACTAAACAC AATGTTCTAT TTTACAAATA AGAAAACAAG CTAAGAGAAG TTAATTGGTT
 TTCAAAAAGT CACACAGTAC AGACATAGCA GAGGAAGAAT GAGAACCTAC AGCAGAGTTG
 AGAAGGTTCA ACAGAATAAC GGGTCATGTT TGGGCACTTG TATTCTGGAG CTGGCACCTG
 GGTCCTGGCA CTTATTAGCT GAATGTCCTT GGGTAAGATA TTTAACTGCC CTGTGTCTCA
 GTTTACTCAT TTGTTCAATG GGCATTATAA TAGTATAAAC ATCAGAAAGT TGTAGGGGGT
 TAAATCTCTA AAGTGTTTAG AATGCTTGCA ACTTATAACA TTTTATATGT GTGTTTATTA
 AATAAATAAA AATAAATC

  Submitted Frequency for ss8348382 back to top
There is no frequency submission for ss8348382.


  dbSNP summary of Genotypes for ss8348382 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120G=0.71666664
C=0.28333333G/G=0.55000001
C/G=0.33333334
C/C=0.11666667
Pr(chiSq=1.927,df=1)
=0.200		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090G=0.83333331
C=0.16666667G/G=0.73333335
C/G=0.20000000
C/C=0.06666667
Pr(chiSq=3.528,df=1)
=0.100		Genotype
Freq.
HapMap-JPT9090G=0.68888891
C=0.31111112C/G=0.48888889
G/G=0.44444445
C/C=0.06666667
Pr(chiSq=0.889,df=1)
=0.371		Genotype
Freq.

  Submitted individual genotype for ss8348382 back to top
There is no individual genotype data for ss8348382.

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