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Submitted SNP(ss) Details: ss8353225           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_1549256
RefSNP(rs#)rs2209311
Submitted Batch IDCHR22_NA10470_extra
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR22_NA10470
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:22SNP10470-243e24.q1kposition:585quality:56sequence:22SNP10470-243e24.p1kposition:-79quality:32

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8353225|allelePos=1632|len=2023|taxid=9606|alleles='C/A'|mol=Genomic
 ACCAAAACTC CTGGATGTCC CCTGCAAAAA GTCCCTAGGG CCAACATCAA GTAACAAGCT
 GAGCAAATAA GAAATGGCAA CTCTTCTCAG GTCTGTCAGA GAAATGAGGT CACAGAGCAG
 ACCATTGTCT CCAAAACTGG AAGTTAGACA AAATGATATA GAGAATTACA ACTTCCTGAA
 GCCAAAACCT CCATGGGAAC CAGTGCCAGG GTAGGAAAAC CTGCACTGTA ATTGAAGAAT
 TGCTAGAGGC TTGGTGTGGG CCAGTCTGAG GAACAGATTC CAGCAGGACC CAATCGCAGG
 GAACTCCAAC ACTGTTGTGA GATTTACCTC CAGGAGCTTG ATTAGGTGCT CAGAGTGAAT
 ATGAGAGAAA CATTCACTTG TGCTTCCTGG GGGGTGTGGA GGGGAAAGCG AATCATTCTG
 AACTACACCA GAGCATTCTT TCTTCTTACC AAGCCCAGCT CTCAGGAGAA ACTATTTTAC
 CAGTGCCTAA TCTGCTGGGC TTTGATCAGA GCCTAACCTA CCTGGGGAAG GCAAGCACCC
 AACTCCAGCC CCCTCTGGCC ATCCTGTCCC ACCATAGGGG AAAAAACTGA GAGGCACTTG
 TGAAGTCCAC AGGCCAGGGG CACAGGCTCA CATAAGACTG CAACCTCATG TAACTGGTGA
 TGAGCCCATG TGACATTTTT GGGAAACAAA TAATTGAAAG AGAGATTGGA CAACCACAGT
 GAAAATGCAG TGAATAAATG AGCAGTGAAA ATGCTGGAGA TAAAGTTCAA ATTGTATGTC
 AGTGGAGTTA TAGAAGCATG AATAGCTGGT GAGGCAACGT AGACCCTGGT AGTGTTTGAA
 AAACTTCAGA TAGGCAGCCC GCAGGACTTA GAGAAGGTGA ATTTAACAGA TACGGGATGG
 GGTACTGACA AATAGGGCGA AGGTGTCCCT GAGGATGTGA CAACAGCAAA AATCTTCACG
 TGAAAGGAAC TTTTGCAGAG ATTTCACGAC ACTGAAAGTG CAAATGATAA GGTGCTGGAA
 ACAAATCCAA ACTTAGAGAG GAAGGTGATA AAACACCCAG ATAGAAAGGA TGTTTGCTCC
 ATATCCGAAG TGTACAAGAA GGAGGTAAGC ACTCTTCCAA CTACTCTTGA AACATTTTTA
 CAAAGAAATA AAATACTGAA ACACTTGATG TTTCCAATGT TTTGAATTAC AGGGTACTAA
 TAAATATTCA TTTATTATTT TTTATTGCCT TCTACATTTG TAACTGACAC TATGAGAGTT
 TCCTATATTT TGACAAAAAA TTGTAAAGGT CACAATATGA TCATTGTTTT TCTGATTGGA
 TGTGGAGATT GCTTTCCTGG GTTTCCGGCT GCACAGTCAT TCTTGCAATC TTGCACTGCT
 GTGAAAAGCG AGGGCTGCCT GTATTCGTTA TAATGCTTAT GGTAATAAAT GCTAAATAAA
 AATTAATCAA GATAAGAGAA ATTAGAATGC CAGGGTAGAC AGGAGAATTG ATATTATGTA
 CAGGGTGGTT TGCCAAAGGT GCCTTTAATA AAGTGACATT GAGCAGAGGC TTGAAGGAGG
 GATGAAGGGA GCCATGCAGC TGTGTTGGGG AAGAAGCAGA GGAGTGATAC AATTTGACTT
 TTCCAAAAAT C
 M
 CTGTAGCTGA AAAATGAAAG CCAACAGAGG CTACAGAAGT GTTCCCGGAA GAGATGATGC
 TGGCCGGGAC AGGGAGGGGT GATGGAGGTG AGAAGTGTGC AGGTTAGGGA TGTAACTCAG
 TGCTCTCCTG CAGCAGGCTT GGACTGGCCC CTGAAAGCCA ACCGTTAAGT TTCAGGAATT
 TTGCAATCCA GTTGTTAAAC TTCTGGTAGC TTGAAACTGG CCATGTTGGG GGTGATTATA
 CCACAGAAAT TGTCAAGTAC AACAAATCAG CTTTTTTTTT CCTTTAAGAG AGTCCATTTT
 TAAACACTTA CCATCTCACG AGTGGACATA AGTATTTTGA AGGCAGAATT GAATATGGGG
 TGTAAAGAGA CATCAGGGAG GATTCGGGAG T

  Submitted Frequency for ss8353225 back to top
There is no frequency submission for ss8353225.


  dbSNP summary of Genotypes for ss8353225 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		9090C=0.61111110
A=0.38888890A/C=0.51111114
C/C=0.35555556
A/A=0.13333334
Pr(chiSq=0.255,df=1)
=0.655		Genotype
Freq.
HapMap-JPT9090C=0.65555555
A=0.34444445A/C=0.51111114
C/C=0.40000001
A/A=0.08888889
Pr(chiSq=0.781,df=1)
=0.403		Genotype
Freq.

  Submitted individual genotype for ss8353225 back to top
There is no individual genotype data for ss8353225.

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