NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss8364005           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_2977511
RefSNP(rs#)rs2326055
Submitted Batch IDCHR9_12_NA07340.2a
Submitted DateNov 14, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR9_12_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:912S-786f17.p1kposition:508quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8364005|allelePos=1123|len=2062|taxid=9606|alleles='C/T'|mol=Genomic
 GCTGGAATTT TGATAAGGAA TGTGAAATTG TTTTATCAAT TAGATGTTGT TTTACGACCC
 ACAATATAGT ATCTTAGTGA ATGTGTTCCA TGTGCTTTTT TCTCTTCCAT GTGCTTTTTT
 GAAAAGAATG TGTGTTTTTT TGTTTGTTTC TGTTTTTTGT TTTTTTGAGA CAGAGTTTCG
 CTCTTGTTGC CCAGGCTGGA GTGCAGTGGC ATGATCTCAG CTCACTGCAG CCTCTGCCTC
 CTGGGTTCCA GCGATTCTCC TGCCTCAGCC TCCCGAGCAG CTGGGATTAC AGGCACCCGC
 CACCACGCCT GGGTAATTTT TGTATTTTTA GTAGAGATGG GGTTTCTCCA TGTTGGTCAT
 GCTGGCCTCA AACTCCCTAC CTCAGGTGAT CTGCCCACCT CGGCCTCCTA AAGTGTTGGG
 ATTAGAGGCA TGAGCCACCG CGCCCGGCCA ATTTACATAT TTTTTTATTA TGTATCTCTT
 AACAAACTGC TATGGCTATT ATTGTTTTGA TAGATTTGTC TTTTGGGCTT CATACTAGAG
 TTATGAGTGG ATTGCATTCC ACATACAATA TTAGGCTATT AAATAGGTTT GTGTACTTAA
 TTTTACCAAT AGGTTTTATA CTTTCAAGTG TTTTTTGGGA AGAGGAGAGG GTCAAATCTG
 TTCTTTGGCC TTCCTGTAAC TGGATATTTA TATCTTTCTC AAGTTTGGGA AAGTTTTCTG
 TTATTATTCT TTTTTTGGAG ACATGGAGAC AAGGTCTCAC TCTGTTGCCC ATGCTGTAGT
 GCAGTAGCAC GTTAACAGCT CACTGTAGCT GTAAACTCTT GAACTCAAGT GATCCTCCCT
 GCCTCAGCCC CCAAGTAGCT GGGATTACAG GTGTGCACCA CCTGTAATGC CTCCCTAATT
 TTTTATCTTC TTTTTTGTAG AGACAAGGTC TCACTATGTT GCCCAGGCTG GTCATGAACT
 CCTGGCCTTG AGCAATCCTC CTGCCTCGGC CTCCCAAAAC ATTGGAACTA CTGGCACGAG
 CTACCATACC AGCTTGTTAT TACTTCTTTC AATAAGCTTT CTTCTACCCC TTGCTCTTGC
 TCAACTCCCT CTTGAACACC AATAATTCTT AGATTTGGTC TA
 Y
 TGAGGTAGTT TTCTACATCT TGTAGGTGAT CCTCATTCTT TTTCATTCCT TTTTCTCCTC
 TCATTATGTA TTTTCAAATA GACTATCTTC ATGGCCCGTT GTGGTGGATC ACGCCTATAA
 TCCCAGCACT TTGAGAGGCC AAGGCAGGCG GAATGCTAGA GCTCAGGAGT TTGAGACCAG
 CCTGGCCAAC ATGGCAAAAC CCCATCTCTA CTAAAAATAC AAAAAAATTG GCCAGGCATG
 GTCAGTGGCT CACACATATA ATCTTAGCAC TTTGGGAGGC TGAGGCAGGC AGATCACCTG
 AGGTCAGGAG TTCAAGACCA GCCTGGCCAA CATGGGGAAA CCCCATCTCT ACTACAAAAA
 TCAGCTGGGG CGCGGTGGCT CACGCCTGTA ATCCCAGCAC TTTGGGAGGC CGAGGCGGGC
 GGATCACGAG GTCAAGAGAT CGAGACCATC CCGGCTAAAA CGGTGAAACC CCGTCTCTAC
 TAAAAATACA AAAAAATTAG CCGGGCGTAG TGGCGGGCGC CTGTAGTCCC AGCTACTTGG
 GAGGCTGAGG CAGGAGAATG GCGTGAACCC GGGAGGCGGA GCTTGCAGTG AGCCGAGATC
 CCGCCACTGC ACTCCAGCCT GGGCGACAGA GCGAGACTCC GTCTCAAAAA AAAAAAAAAA
 AAAAAAAAAA AAAAAATCAG CTGGGCATGG TGGCAGGCAC CTGTAATCCC AGCTATTCGG
 GAGGCTGAAG CAGGAGAATC GCTGGAACCA AGGAGGCGGC GGTTGCAGTG AGCTAAGATC
 GCACCACTGC ACTCCAGCCT GGGCAACAAG CAAGACTCTG TCTCGGGGAA AGAAAAAAAA
 AAAGATTTGT ACACTTTGTG AAATTTTTAC TCAAGAAAAG TGAAGGAGAA ATATTTCCCA
 AGGAGAAGAT GACACAGTGA AGTGTGACTG CATAAATTT

  Submitted Frequency for ss8364005 back to top
There is no frequency submission for ss8364005.


  dbSNP summary of Genotypes for ss8364005 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HAPMAP-CHB8282T=0.89024389
C=0.10975610T/T=0.78048778
C/T=0.21951219
Pr(chiSq=0.129,df=1)
=0.752		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686T=0.88372093
C=0.11627907T/T=0.79069769
C/T=0.18604651
C/C=0.02325581
Pr(chiSq=0.386,df=1)
=0.584		Genotype
Freq.
HAPMAP-ASW9898T=0.94897962
C=0.05102041T/T=0.89795917
C/T=0.10204082
Pr(chiSq=0.014,df=1)
=1.000		Genotype
Freq.
HAPMAP-MEX100100T=0.73000002
C=0.27000001T/T=0.51999998
C/T=0.41999999
C/C=0.06000000
Pr(chiSq=0.214,df=1)
=0.655		Genotype
Freq.
HAPMAP-CHD170170T=0.88823527
C=0.11176471T/T=0.78823531
C/T=0.20000000
C/C=0.01176471
Pr(chiSq=0.005,df=1)
=1.000		Genotype
Freq.
HapMap-JPT172172T=0.91860467
C=0.08139535T/T=0.83720928
C/T=0.16279070
Pr(chiSq=0.105,df=1)
=0.752		Genotype
Freq.
HAPMAP-GIH176176T=0.92045456
C=0.07954545T/T=0.85227275
C/T=0.13636364
C/C=0.01136364
Pr(chiSq=0.416,df=1)
=0.527		Genotype
Freq.
HAPMAP-TSI176176T=0.75000000
C=0.25000000T/T=0.56818181
C/T=0.36363637
C/C=0.06818182
Pr(chiSq=0.081,df=1)
=1.000		Genotype
Freq.
HapMap-CEU226226T=0.79203540
C=0.20796460T/T=0.61946905
C/T=0.34513274
C/C=0.03539823
Pr(chiSq=0.257,df=1)
=0.655		Genotype
Freq.
HAPMAP-MKK286286T=0.99300700
C=0.00699301T/T=0.98601401
C/T=0.01398601
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss8364005 back to top
There is no individual genotype data for ss8364005.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement