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Submitted SNP(ss) Details: ss8368894           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_7563645
RefSNP(rs#)rs6055220
Submitted Batch IDCHR22_NA10470_extra
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR22_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:22SNP10470-283p20.q1kposition:376quality:41

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8368894|allelePos=1260|len=1782|taxid=9606|alleles='T/A'|mol=Genomic
 CTTTTGAGGA GAAGAAAGGA ACAGTAGGTA GTAAGTTTTT TGTCAAGTAT GTCAATTTGT
 TCCAAAGAAA TGGGCCCTCT TTTCTAAAGT TATCATTATT TTTTCTAGAA AATCACACAT
 TTCACCCATG TTTTAAATGT ATTCACATAA AATTGAGAAA AGTATTCTTT AGGGTGCTTG
 TGATTTTTTT CTATATCCAT GGTTATTTCT GTTTTTTCCT AATTTTACAT ATTTATACTT
 CTTTTTTTCT AATACATTTG GTTAATAGTT TACTTAACTA GATTTTTCAA AGAATCCGAT
 CTTAGATTTC TTCATATTGG TAAATTTGTG TTTTGTTTTG TTTTGTTTTG TTTGCTCTCC
 TTTTTTGTTT CTTAGTTTCT TCGGTTGGAT GCTGAGTTAT TGAGTATTTC ATTTTTGTTC
 TTTCTGGTTT AGTGAGCTAA ATTTGTACAG AACTAGGTTA TCTTTTTTTT TTTTTTTTGA
 CAGAGTCGTG CTCTGTTGCC CAGGCTGGAG TGCAGTGGCA CAATCTCGGC TTGCTGCAAA
 CTCCACCTCC CAGGTTCGAG TGATCCTCCC ACAGTCCCCC TAATAGCTGA GATTACAGGC
 ATGTGCCACC ATGTCCGGCT AATTTTTGTA TTTTTAGTAG GGACGGGGTT TCGCCATGTT
 GGCCAGGCTG GTCTCAAACC CCTGACCTCA GGTGATTTAC CTGTCTCGAC CTCCCAAAGT
 ACTAGACAAT CTTTAGGAAT TAAGACTAAT AGTTTTCCTC TGAAGACTGC TTTAACCATA
 CCCCTTTCGT TTTGATGCAT AGATTTTTCC AACCCTTATT TTTCTAAATG TGTTGTAGCT
 TAATTTCTGA TATTAATTTT GACCCAAAAG TTAAGGAGAA AATTTCCTTA ACATTTTTCT
 GGTAAGGTTG TTTTCTCTTT ATTTAAATAA ATTTCTAGAT TTATTACATT AAGAGCACAG
 AATGTCACTG AGAATCGTTG TGACCTAATA CAAGGTAGAA TTTTGTAAAT AATTTATGGA
 CACATGAAAA GAAGGTGTCT TTTTGATTTT CTGGCTATAT AATTGCATAT ACTTCATTGA
 ACTTGTTATT AATATCCTTA TATCTTAAAT ATCTGTACTA TTTTTGCACA GTTGATATGT
 TTTGCTCTGA AGGAGGTAGG TAAAAATCTC AGCCAGTATT TTCTAAAAAT GTATTTTCCT
 TTTTTGAGTG TTAGTTTCTC CTTCAGATTT TTTGGGCTAT GTGATTTGGC TAAAAAAAA
 W
 TCATGGCATA TATTCATTGT AATTTATGCC ACTTTCATTT TTGAATGGCT ATCCTTGTCA
 CATGAATTCA ACCTTGTTGG ATACTATTAC TCTTGCTTTT CTTTTTCTTT GTCCTTTTCT
 ACTGTGTCTT TGTCCATCAT TTTACTATTA ATTTATCTGT CACACTATTT TAAATGCCTT
 TTATTTAAAG TGCTTTGATA CAGTTCTGAT TTTTTAATGT AATCTGAGAA TAGTTTTCTT
 TTTACAAGTA TGTTTATTTT ATATATATTC ATTGCTAAGT TAAATGTATT TTCTTAGGTT
 CACCATCATA TTTTATGCTT TCTGTTTTTA ATGCTTCATT TGCGTTTTTA ATTTTTGCTA
 TGATTTGTGC ATTTTTTTGT TCTGTGGTCT GAATGTTTGT TTTCTGATAG TTTAGAAGGT
 TCATGATCTT CAGTTTTCTG CTTCTTATTT TCATCGTTTC AGTGAACATA GCAAGACAGA
 GATGTTTTTG TTCTGCCATA TATATTTAAA CTGTCCATTG AT

  Submitted Frequency for ss8368894 back to top
There is no frequency submission for ss8368894.


  dbSNP summary of Genotypes for ss8368894 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI120120T=0.94999999
A=0.05000000T/T=0.89999998
A/T=0.10000000
Pr(chiSq=0.016,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss8368894 back to top
There is no individual genotype data for ss8368894.

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