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Submitted SNP(ss) Details: ss8396963           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_5969317
RefSNP(rs#)rs6076920
Submitted Batch IDCHR9_12_NA07340.2a
Submitted DateNov 14, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR9_12_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:912S-745d16.q1kposition:521quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8396963|allelePos=686|len=1089|taxid=9606|alleles='C/G'|mol=Genomic
 GCACAGGGGC TGTTGGGGAT GGAAATGAAA TGAGTCCTGG GGACTTGACT CCTGCAATGA
 CTCTTCCACC CCTTTCACCT GGCTCCCTTG GGAATGAATG TCGCTGATGT CCCACATTTT
 GCCAAATCCC GTGGTCACCC CATTCTCAGC TGACTAGGGC TCCTGATGGT TTTGCCAACC
 ACTCCCTCCC TCCTTAAGCA CTCTCTTCTC TTGACCTCCA GGACATCACA TTCTCCTGGT
 TTTTCTGCTA CTCCACTGGT CATACCTTCT TGATCTCCTT TCCTGGTTCT TCTTCATCCC
 GATGTTAAAA GTTGGGGTTC TTCAAGGCTC AGTTCTGGGC CCTCATCTCT CTGTACTGTC
 TCTCTGGTGA TCTCATGAAT TTCTTTGGCT TCAAATATCA TCTTTATACT CCCAAATTTA
 TACCTCTGGC TCAGACTCTC CTCCTCCAAG CTTCAGTCTG ATGCAGCATT GTGTTTAAGG
 TATCAGATGT GGAGCCAAAC TGCCTGGGCT CAAATTCTGA TTCTGCTATT TACTAGCTAT
 GTGAACTGGG GAAATGTATT TAACATCCCT GTGTCTCAGT TTTTTCATCT GCGAAATGGG
 AATAATGACT GAATCCTCCC TATCTGGATT GCTGCAAGAG TAAATACTTC AATATATGCT
 TAGAACTATG CCTGGCACAG TACAA
 S
 AGGTTCGTGT TATTATTACT GAACATTTCC CCTGGATGCC TCATAGATCT TTACTATCCA
 GCAGGCAATT AGATACGTGA TTCTGGGGCT CATCAGAAGG CCTTGGCTGG AGATACTCAA
 CTAAGCATCC TCAGCACAGA GATGGAGGAG GACGCATTAG GCTTTAGGGA AGGGGATGGT
 GCTGGAGTAG TGCATAGGGT GACAAATGAC CTGCAAGACA GTTATAAGTG GAAATAGGCA
 AGGACATTAA GAAGGCCTAG CCAGGAAGGC TGGAGAAGCA CCAGGGAAAC ATCTGGGGGC
 CAAAGAGACA GAGAACATCA AGAGGGAGGA AATAAACAAT AGGCTCCACA GACGTAAGTG
 TCCACTGACT TGGCAGCTGA TGTGGGTGGT CAGATTGCAG TGA

  Submitted Frequency for ss8396963 back to top
There is no frequency submission for ss8396963.


  dbSNP summary of Genotypes for ss8396963 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU226226C=0.86725664
G=0.13274336C/C=0.75221241
C/G=0.23008850
G/G=0.01769911
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686C=0.83720928
G=0.16279070C/C=0.69767439
C/G=0.27906978
G/G=0.02325581
Pr(chiSq=0.024,df=1)
=1.000		Genotype
Freq.
HapMap-JPT172172C=0.91860467
G=0.08139535C/C=0.84883720
C/G=0.13953489
G/G=0.01162791
Pr(chiSq=0.385,df=1)
=0.584		Genotype
Freq.
HapMap-YRI226226C=0.98230088
G=0.01769911C/C=0.96460176
C/G=0.03539823
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.
HAPMAP-ASW9898C=0.91836733
G=0.08163265C/C=0.83673471
C/G=0.16326530
Pr(chiSq=0.061,df=1)
=1.000		Genotype
Freq.
HAPMAP-CHB8282C=0.85365856
G=0.14634146C/C=0.73170733
C/G=0.24390244
G/G=0.02439024
Pr(chiSq=0.023,df=1)
=1.000		Genotype
Freq.
HAPMAP-CHD170170C=0.89411765
G=0.10588235C/C=0.80000001
C/G=0.18823530
G/G=0.01176471
Pr(chiSq=0.003,df=1)
=1.000		Genotype
Freq.
HAPMAP-GIH176176C=0.94886363
G=0.05113636C/C=0.89772725
C/G=0.10227273
Pr(chiSq=0.025,df=1)
=1.000		Genotype
Freq.
HAPMAP-LWK180180C=0.96666664
G=0.03333334C/C=0.93333334
C/G=0.06666667
Pr(chiSq=0.007,df=1)
=1.000		Genotype
Freq.
HAPMAP-MEX100100C=0.94000000
G=0.06000000C/C=0.88000000
C/G=0.12000000
Pr(chiSq=0.024,df=1)
=1.000		Genotype
Freq.
HAPMAP-MKK286286C=0.89510489
G=0.10489511C/C=0.79020977
C/G=0.20979021
Pr(chiSq=0.390,df=1)
=0.584		Genotype
Freq.
HAPMAP-TSI176176C=0.86931819
G=0.13068181C/C=0.76136363
C/G=0.21590909
G/G=0.02272727
Pr(chiSq=0.218,df=1)
=0.655		Genotype
Freq.

  Submitted individual genotype for ss8396963 back to top
There is no individual genotype data for ss8396963.

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