Submitted SNP(ss) Details: ss8400588

Submitted SNP(ss) Details: ss8400588

Submitter
Handle	SC_SNP
Submitter SNP ID	NT_011387.8_15333240
RefSNP(rs#)	rs6079806
Submitted Batch ID	CHR9_12_NA07340.2a
Submitted Date	Nov 14, 2003
Publication Cited	[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Apr 17 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_011387
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	CHR9_12_NA07340
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 4
Genotype Submission	N.D.
Haplotype	N.D.

Comment
sequence:912S-618f09.q1kposition:407quality:56

Fasta sequence (Legend)

 CTATGCCATC TCTTGTCAAG CAATTATAAA TACTTGTAAC TAAAACATTA AAGCATAGAG
 GTTAACTAAA CAAAGCATCA GCACATTGCA GGCTAAAGAA AACCCTTGTT TAAAGTGATT
 TCCATTTTGA TTAATTTATC CAGATAAACC ATCAATTTCC CAAAGTTGGA GACTCCGTAG
 ATCCAGACTT TGTTTTCTAC
 R
 TGAAAACTGA CAGTTCTCTG GAACTGTAGC AGAGAATATG GTACCATTTA AATTATCGAG
 ACTGTAGGGC AAAATTTCAG GCCTCTTAAA GCCAGAAAAA TGGCCCCAGT GAGCTCTCTC
 ATGATCAGTT CATTCTTCTG GGAATCTCAG GAATTACTAT GTCTAATGAC TTTGCCAGTG
 GGTCTGGCCT GTGTAATTAA

Submitted Frequency for ss8400588

There is no frequency submission for ss8400588.

dbSNP summary of Genotypes for ss8400588

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	120	120	G=0.83333331	A=0.16666667	G/G=0.68333334 A/G=0.30000001 A/A=0.01666667	Pr(chiSq=0.384,df=1) =0.584	Genotype Freq.
HapMap-HCB - EAST ASIA	90	90	G=0.88888890	A=0.11111111	G/G=0.77777779 A/G=0.22222222	Pr(chiSq=0.148,df=1) =0.752	Genotype Freq.
HapMap-JPT	88	88	G=0.89772725	A=0.10227273	G/G=0.79545456 A/G=0.20454545	Pr(chiSq=0.111,df=1) =0.752	Genotype Freq.
HapMap-YRI	120	120	G=0.99166667	A=0.00833333	G/G=0.98333335 A/G=0.01666667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss8400588

There is no individual genotype data for ss8400588.

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