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Submitted SNP(ss) Details: ss8401202           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_16433031
RefSNP(rs#)rs4813222
Submitted Batch IDCHR6_NA07340
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR6_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S6C_3-93f23.q1kposition:192quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8401202|allelePos=800|len=1000|taxid=9606|alleles='C/T'|mol=Genomic
 CAACACATAA CAGCAGCAAC CTGCTGACAT AAATGGCCAC AGCAGCAGTT ACCATTTATG
 AGTGGTGACT GTGTATCAGG TACAATGAGT CCTCACTTAA GGTCATTGAC AGGTTCTTGG
 AAAGTGCAAC TTTAAGGGAA AGGACATACA GTGGGTCCTC AAATAACAAT GCTTCCTTCA
 ACATCATATT GCTATAATGT TGACGAGAAA AAGAACTGGT TTCATTATAT GTTGTTTCAC
 TTAAAGTCAC GATTTCCAAG ACTGTATCAA GAAGCGACAT TAGGCCAGGG GTGGTGGCTC
 ACGTCTGTAA TACACTTTGG GAGGCCGAGG CAGATGGATC ACTTGAGGTC AGGAGTTCAA
 GACCAGCCTG ACCAACACGG TGAAACCCCA CATCTACTAA AAATATAAAA ATTAGCTGGG
 TGTGGTAGCG GACACCTGTA ATCCCAGCTA CTCAGGAGGC TGATGCAGGA GAATCACTTG
 AACCTGGGAG GTGGAGGTTG CAATGAGCCA AGAGTGTGCC ACTGCACCCC AGCCTGGGTG
 ACAGAGTAAG ACTCCATCTC CAAAAAAAAA AAGGAAGGTA CATTAAGTGA GGACTTCCTG
 TACCATGCTA AGTACTAGAC ATGGATTATT TCATTGAATC TCCACAATAC CCAGAGATAG
 GTACCACTAC TATCCTCATT TTATAGGTTA GGCAAGGGAG GTTTAGTGTG ATTCAAATAA
 CTTGTCCAAG ACCACAAAGC AGTCAAGTAG GTGTAAAAAT CCTATATTGC CATGTCTGCC
 CTTGAAACTA CCGAAGAGA
 Y
 TGGCTCCCCT CACAGGTTTA ATTTCAAGGA GGAAAAAGCA CCTCAACCAC TCAGATTTAC
 TTGTAGATTA GATTTATAAT GATCCAACCA ACACAAAGAA TAATATAAAC CTTACTAAGC
 TAAAAGAATG AAGCAAGTAA TTGGTATACA CTTAAAAGTC AGAAGCTCAC TCCATTTGAG
 ATGAACATCC CACATTAGTT

  Submitted Frequency for ss8401202 back to top
There is no frequency submission for ss8401202.


  dbSNP summary of Genotypes for ss8401202 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120T=0.98333335
C=0.01666667T/T=0.96666664
C/T=0.03333334
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss8401202 back to top
There is no individual genotype data for ss8401202.

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