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Submitted SNP(ss) Details: ss8413256           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011333.5_1121602
RefSNP(rs#)rs4809334
Submitted Batch ID11-APR-2003c
Submitted DateApr 17, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45080-1587a04.p1kposition:297quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8413256|allelePos=401|len=801|taxid=9606|alleles='G/A'|mol=Genomic
 CTGGGCATGT GTGGGTAGCA GGCCCTGGGC GTGGTGTCCG ATCAGACGCC TCCCTGGAGG
 CAGAGAAGAA ACAAACACTG TGGAGTAATA CGGACCCAAA AGTGTGCAGG CGAAATGGGA
 GATGTGGGTG CAACTCAAAG TCCTGGGCTC TTCTTGCTGG ACGCCGGAGA AGCAGCCAGA
 CCCATTTAAT CAAGTTCTTT TCCCCCAACC CTGAGACCCA ACGTCACTCA GTGGCAGGAA
 CTCCACACCA CCATCTCCAT GGTGCGTGCC CTGGGGCCAG GCTCAAAAAC CTGGGGGACC
 CTCAGCACGC CCAGTGCCGT TATGCTACTC AGGCCCAGAT ACCAGCACGT CAGACCTGGG
 CATGGGCCAC TGAGAGAGCC CGGAGCAGCC ACGTCCACGG
 R
 ACCCTACGGG AGACCCACCT GAAGCCCGGT GCACGCATGT GCCGAGGGCT GCTCACCCTG
 GGATTACCAT GTACTTGCTG CTGTGCAGGA CATCTTCCCC TCTGCATACT GTGACCACCT
 TTCAGTGCTG GGATTTTTAA CTACACAGCT TTTGGATGTC TGAACACATC ATAATTAATT
 AAACAGGCAC TACTGCTGAA CACGTTTCTG TGTTTTCACC CTTGTGGACC CTTCAGTGAG
 GCTCCTACAG ATGGGTCTTT GCAGCCCTCT GCCACCTCCT GAAGATAAAT TCTGACAAGT
 GGGATAAGCA CCTGCCCTCC TGACCAGCAG TCCCCACTTG CCCTGCAGGG AGGGTCTACT
 GAGGCTCTGG GGGCTCCAGT GGACAGGCAC ACCCCCATGA

  Submitted Frequency for ss8413256 back to top
There is no frequency submission for ss8413256.


  dbSNP summary of Genotypes for ss8413256 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU116116G=0.84482759
A=0.15517241G/G=0.68965518
A/G=0.31034482
Pr(chiSq=0.560,df=1)
=0.479
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888G=0.55681819
A=0.44318181A/G=0.61363637
G/G=0.25000000
A/A=0.13636364
Pr(chiSq=2.605,df=1)
=0.150
Genotype
Freq.
HapMap-JPT9090G=0.61111110
A=0.38888890G/G=0.44444445
A/G=0.33333334
A/A=0.22222222
Pr(chiSq=4.015,df=1)
=0.050
Genotype
Freq.
HapMap-YRI120120G=0.94166666
A=0.05833333G/G=0.88333333
A/G=0.11666667
Pr(chiSq=0.026,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss8413256 back to top
There is no individual genotype data for ss8413256.

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