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Submitted SNP(ss) Details: ss8447377           
Submitter
HandleSC_SNP
Submitter SNP IDNT_025215.4_68808
RefSNP(rs#)rs6119190
Submitted Batch IDCHR6_NA07340
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR6_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S6C_3-154e22.p1kposition:533quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8447377|allelePos=2000|len=2200|taxid=9606|alleles='G/A'|mol=Genomic
 TTGGTTTCTG TCACCATAAG TTAGTTCTGC CAGTTCTTGA ACTTCATATA AATGAAACCA
 TAGCACATGT AATCTTTGGG TCTAGCTTCT TTCACTCAGT GTAAAGTTTT TGAAATTTTT
 CTGTTGCTGT GTGTCTTGAT AGTTTGTTCT CTTTTGTTAC TGAACAGTGT TGAGTAAAAG
 AGTCAAACTC TGTAAAATAT TTGGAGAGAT TTATTCTGAG TGAAATATGA GTGACCATGG
 CCTGTGAGAC AGCCCTCTTC AGGAGACCCT GAGAAAATGT TCCCAAGGTG GTTGGGGTTC
 AGGTTGATTT TATACATTTT AGAGTGTTAA AACACACTAA ATATGGCCTG AGAAGGACTC
 CATACTTATA TATTTGAATC TTTGTGGACA AATTGCAACC TAACTTAATA AGTAGACAAG
 ATTGAAAAAC CTAACTTAAG AGTATGCACC TGTAACAATA GCTGAGTGTT GGCCAATCCC
 AGTAGCCATA CTTCAACCAC TCTTACACTA CTGAGTGTTC AAACTGTGTT CAACTAAGGC
 AAATGCTAAG CTGTAACCAA TTTAGTTGTT TCTGTACCTC ACCTCCAATT TCTGTACCTC
 ATTTCCCTTT TTATGTATAT AACTCTTTCA CCACGTGGCT GTGCTGAAAT CTCTCTGAAT
 CTGCTGTGAT TTCAGGGACT GCTCTATTCA TGAATTGTTG ATTGCTGAAT TGAACTTCTT
 TAAATTTAAT TCAGCTGAAG TTTTTCTTTT AACAGATGGT GTCAGAAGTG GGATCTGAAG
 TAGAGCCTTA ACAATCTCCA GGACTGCTGA GTGAACAAGC AAGGTACCTG CAAGGACCTA
 CTTTTGTCCC TTGATCTCTC AAAGTGGCTG GGGATCATGG GTAAGTTCTC TCAGATTTCA
 GAACTCCATG GATTTGTGTT TGGAATTCTC TGAGTTTCTC TGAACAAATT TGTGATCCAA
 GCAGTTTGAA AGTCAGGACA GAAACTGAAC TAGGTCCAGG TTCAGGTTAA ATCTGGTAAT
 TAGCTGACTT GGATCCAGCT GGAGGCCTCT CTCTCTCTCT CTTTTTTTTT TTTTTTTTTT
 TGAGATGGAG TCTTGCTGTG TCACACAAGC TGGAGTAGAG GGGCATGATC TAGGCTCACT
 GCAACCTCTG CCTCCTGGGT TCAAGAAATT CTCCTGCCTC AGCCTCCCGA GGAGCTGTGA
 TTACAGGTGT CCACCACCAT ACCCAGCTAA TTTTTGTATT TTTAGTTGAG ACGTGGTTTC
 ACCACGTTGG CCAGGCTCGT CTTGAACTCC TGACCTCAAG TGATCTACAC ACCTGGGCCT
 CCGAATTGCT GGGATTACAG ACGTGAACCA CCATGCCAGT CCCAGTTAGA GGCCACTTAC
 CTTTGGCTGA GACAGAAAGA AAATATTAGT AAATGGTAAT ATTGCAGTGG TTGTAAAATT
 TGGCTTTTAG AAATGCACAG GGATTCTTGC GTTCTACCCC TTCATTTCAT TTTTCTTGTG
 TACATAGGTA GAAAAAAATT ATTGGCTAAG TCAATCAACG GAACCTAAGA GTAAAACCAA
 TATCTTAGGT AAAAATGGGT TCCTTAATTT TTGAAAATCT GAGTTTCTTC CATCTTTTTA
 TTTTTTATTT TATTTATTTA TTCATTATAA TTATTATTAT TTTGAGACAG AGTCTCTCTC
 TGTCACCCAG GCTGGAGTGC AGTCGCGCAA TCTCAGCTCA CTGCAAGCTC TGCCTCCCGG
 GCTCAAGCGA TTCTCCTGCC TCAGCATCCC AAGTAGCTGG GATTACAGAC GCGTGCCACC
 ACGACCAGCT AATGTTTTGG ATTTTTAGTA GAGACGGGTT TTCACAGTGT TAGCCACGAT
 GGTCTCAATC TCCTGACCTT GTGATCCGCC CGCCTCGGCC TCCCAAAATG CTGGGATTAT
 AGGTGTGAGC CACTGCGTCC GGCCTAAAGA AACAGAATTT TATTAATTTA TCAGCTGAGT
 TAGCATTACA GTGGCTTAC
 R
 AAGCATTTGC CATTGTTTGA GGTTGCAGTG AGGATAACAT GAAACACCTG AAGAAAAACC
 TTCACAAAAC CTGGTCTCTT TCCAACAGCT TAGCTATGTG AGAATAGCTT TTATAACATG
 ACAACCCTAA AAATAAAACC ATTTTAAACT TAAAGCTGTC CTTCCAGTTG CTGTTTCAAA
 CTTTATCCCA AGAACTGAAG

  Submitted Frequency for ss8447377 back to top
There is no frequency submission for ss8447377.


  dbSNP summary of Genotypes for ss8447377 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120G=0.90833336
A=0.09166667G/G=0.81666666
A/G=0.18333334
Pr(chiSq=0.107,df=1)
=0.752		Genotype
Freq.
HapMap-YRI120120G=0.84166664
A=0.15833333G/G=0.68333334
A/G=0.31666666
Pr(chiSq=0.619,df=1)
=0.439		Genotype
Freq.

  Submitted individual genotype for ss8447377 back to top
There is no individual genotype data for ss8447377.

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