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Submitted SNP(ss) Details: ss8450601           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011333.5_1026225
RefSNP(rs#)rs6122022
Submitted Batch ID11-APR-2003d
Submitted DateApr 17, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 7
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45081-855h03.q1cposition:267quality:43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8450601|allelePos=401|len=801|taxid=9606|alleles='C/A'|mol=Genomic
 TGGGGACTCA GGGAGGCCCG CCGGGACCAC TGCGGGACAG TGAGCCGAGC AGAAGCTGGA
 ACGCAGGAGA GGAAGGAGAG GGGGCGGTCA GGGCTCTCAG GAGCCGGGTC CTGGGCAAGG
 CGCAGCCGTT TTCAAATTTT CAGGAAAGCG GTCGGCTCAC ACTCGAGCAG TAAAAAGATG
 CCTCTGGGGA GGAGGCCCGT GCAGCTCTCC GGGCAATGGT GGTGGCTCGG CCTAGAGAGG
 CGGTAGTGGA ACGCAGACCC TGGTGGGGGA ATGACATCAA GGGAGGAGAC GGGCGGGACC
 CCAGATTTCT GCCTGTGGGC GATGGAAGTG AGGTTCACTG GCCAGCGGAG CCGGACACAG
 AACGCGCAAA ACGCCGTGTA GGCCTGGAGG AGCCGAAGAG
 M
 AGGCGGACCC CCTCCGCGGG GGAACAGTTT CCGCCGGGAG CACAAAGCAA CGGACCGGAA
 GTGGGGGGCG GAAGTGCAGT GGGCTCAGCG CCGACTGCGC GCCTCTGCCC GCGAAAACTC
 TGAGCTGGCT GACAGCTGGG GACGGGTGGC GGCCCTCGAC TGGAGTCGGT TGAGTTCCTG
 AGGGACCCCG GTTCTGGAAG GTTCGCCGCG GAGACAAGTG AGCAGTGAGT CGCAGTGACC
 CTACAAGTGG TTCTTTTACC CGAGCGGCTC GTAGGCGCGT TGCGGTTTTT CGAAACTACA
 GCTCCCGGCA GGCCCCAAGC CGCCCTCGGG GCCGCGGGTC GGCGGATTGG CCGCGCTGCA
 TTTTGGGACC TGTAGTTTCC TGCGCTCGTG GCGCTGGCGC

  Submitted Frequency for ss8450601 back to top
There is no frequency submission for ss8450601.


  dbSNP summary of Genotypes for ss8450601 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
8686C=0.87209302
A=0.12790698C/C=0.76744187
A/C=0.20930232
A/A=0.02325581
Pr(chiSq=0.164,df=1)
=0.752
Genotype
Freq.
HapMap-JPT170170C=0.91176468
A=0.08823530C/C=0.83529413
A/C=0.15294118
A/A=0.01176471
Pr(chiSq=0.208,df=1)
=0.655
Genotype
Freq.
HAPMAP-CHB8282C=0.93902439
A=0.06097561C/C=0.90243900
A/C=0.07317073
A/A=0.02439024
Pr(chiSq=5.344,df=1)
=0.025
Genotype
Freq.
HAPMAP-CHD170170C=0.89999998
A=0.10000000C/C=0.82352942
A/C=0.15294118
A/A=0.02352941
Pr(chiSq=1.921,df=1)
=0.200
Genotype
Freq.
HAPMAP-MEX100100C=0.98000002
A=0.02000000C/C=0.98000002
A/A=0.02000000
Pr(chiSq=48.040,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss8450601 back to top
There is no individual genotype data for ss8450601.

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