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Submitted SNP(ss) Details: ss8450603           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011333.5_1044392
RefSNP(rs#)rs6122023
Submitted Batch ID11-APR-2003d
Submitted DateApr 17, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR20_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:Chr_20-47841234e11.q1kposition:147quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8450603|allelePos=401|len=801|taxid=9606|alleles='G/A'|mol=Genomic
 GTGGTGGGGT GGGCTTCTGC CATCTCATTC AGGACCAGAA CTTCAGTTTT CATCCCTATC
 TGTTCCCCCA CCCCtttgga gatggggtct cactctgtca cccaggctgg agagcggtgg
 tgccatcacg gctcactgca gcctccacct cctgcagcct ccacctcttg ggctcaagtg
 atcctcctgc ctcggcctcc caagctcctg ggactacagg cgtgtgccac tgtgcttggc
 AGGGTCCATT CTTTTCCTCA CACTTTATTT ATTGAAGAGC CCAGGCCGTT TACCCTGCAG
 AGTCGGAATC TGTACAGGAG GGGCAGCCAC ACGAGTTCCC CGGTTTACTC TGAACTTAGG
 TGGCTTGAGG GCCCCAGTTA GACTGCGGCC ACCGTTTGCC
 R
 GGCTCCAGAT GGGACGTCCT TTCTATCAGA AGGCTCACAG TATCTCCTTT CCCGTTTCTT
 CCCATGTGAA CATTGTTGCT GCTGAACACC TGAATATGTT AATCACTGGG GGCTTGCAAG
 ATGGCAGTGT GCTAATTCCA TCATCTAGTC AGTTAGCAGG AATAACTTAG GACCACGCCC
 TGCACCATAT CAGCTATGTG GTGATCCCAT TCACACAGGA AAGGTGGGAC AAATGCTGGG
 GGTGggccgg gtgtgctgtc tcacacctgt catcccagca ctttgggagg cccaggcagg
 cggatcacga ggtcagagat tgagaccatc ctggccaaca cggtgaaacc ccgtctctac
 taaaaataca aaaaaattag ccaggtgtgg tggtgCATGC

  Submitted Frequency for ss8450603 back to top
There is no frequency submission for ss8450603.


  dbSNP summary of Genotypes for ss8450603 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		8080G=0.93750000
A=0.06250000G/G=0.89999998
A/G=0.07500000
A/A=0.02500000
Pr(chiSq=5.184,df=1)
=0.025		Genotype
Freq.
HapMap-JPT7878G=0.94871795
A=0.05128205G/G=0.89743590
A/G=0.10256410
Pr(chiSq=0.011,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss8450603 back to top
There is no individual genotype data for ss8450603.

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