Submitted SNP(ss) Details: ss8819642

Submitted SNP(ss) Details: ss8819642

Submitter
Handle	SNP500CANCER
Submitter SNP ID	ABCC4-02
RefSNP(rs#)	rs2274407
Submitted Batch ID	09022003_update
Submitted Date	Oct 31, 2003
Publication Cited	N.D.
First entry to dbSNP	May 30 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_009952.11
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	ABCC4-02

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Platform: MGB Eclipse Forward primer: AGGAACTTCTCAGAATCTTGGA, Amount: 100 nM Reverse primer: ATCTCCTTACTGAA, Amount: 1000 nM Probe 1: ATCTCCTTCCT*GA Probe 2: CGTGAGCCACTTTATCTGGTTG Annealing temperature: 58 C

Fasta sequence (Legend)

 TCTTGGGTAG TTCCTGGCCA CCTCTCACCT TTGCACTTTT TTGTTGTtgt tgcccaggaw
 ggtctcaaac tcctgggttc aaacaattca tccacctcag ctcccaaagt gctgagattg
 caggcgtgag ccacTTTATC TGGTTGACAT CACTGCTTTT TWAAAAACCT GTACTCTCTT
 TCAG
 K
 AAGGAGATTT CCAAGATTCT GAGAAGTTCC TGCCTCAGRG GGATGAATTT GGCTTCRTTT
 TTCAGTGCAA GCAAAATCAT CGTGTTTGTG ACCTTCACCA CCTACGTGCT CCTCGGCAGT
 GTGATCACAG CCAGCCGCGT GTTCGTGGCA GTGACGCTGT ATGGGGCTGT GCGGCTGACG
 GTTACCCTCT T

Submitted Frequency for ss8819642

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PAC1 - MULTI-NATIONAL	48	G=0.87500000	T=0.12500000	0.219 +/-0.101	G/G=0.75000000 G/T=0.25000000 T/T=0.00000000	0.250	08272003	SNP500CANCER
P1 - MULTI-NATIONAL	204	G=0.90200001	T=0.09800000	0.177 +/-0.047	G/G=0.81400001 G/T=0.17600000 T/T=0.01000000	0.176	08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G=0.85399997	T=0.14600000	0.249 +/-0.102	G/G=0.70800000 G/T=0.29200000 T/T=0.00000000	0.292	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G=0.93500000	T=0.06500000	0.122 +/-0.089	G/G=0.87000000 G/T=0.13000000 T/T=0.00000000	0.130	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G=0.93500000	T=0.06500000	0.122 +/-0.077	G/G=0.90300000 G/T=0.06500000 T/T=0.03200000	0.065	08272003	SNP500CANCER

dbSNP summary of Genotypes for ss8819642

No sufficient data to compute Hardy-weinberg probability for ss8819642.

Submitted individual genotype for ss8819642

There is no individual genotype data for ss8819642.

Disclaimer Privacy statement