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Submitted SNP(ss) Details: ss8819815           
Submitter
HandleSNP500CANCER
Submitter SNP IDLEPR-02
RefSNP(rs#)rs1805096
Submitted Batch ID09022003_update
Submitted DateOct 31, 2003
Publication CitedN.D.
First entry to dbSNPMay 30 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQUENCING
Ascertainment Samplesize204
PopulationP1
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Platform: TaqMan Forward primer: AAATTCTCCATTGAAGGAT, Amount: 900 nM Reverse primer: GGCCTCTATCTCCCATGAGCTATTA, Amount: 900 nM Probe 1: GTTCAGTCACCAAGTGCTTCTCTAG, Amount: 200 nM Probe 2: TCTCCGTTGAAGGAT, Amount: 200 nM Annealing temperature: 60 C

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8819815|allelePos=174|len=369|taxid=9606|alleles='A/G'|mol=Genomic
 GTTAACTTCT CTGAGGCTGA GGGTACTGAG GTAACCTATG AGGACGAAAG CCAGAGACAA
 CCCTTTGTTA AATAYGCCAC GCTGATCAGC AACTCTAAAC CAAGTGAAAC TGGTGAAGAA
 CAAGGGCTTA TAAATAGTTC AGTCACCAAG TGCTTCTCTA GCAAAAATTC TCC
 R
 TTGAAGGATT CTTTCTCTAA TAGCTCATGG GAGATAGAGG CCCAGGCATT TTTTATATTA
 TCAGATCAGC ATCCCAACAT AATTTCACCA CACCTCACAT TCTCAGAAGG ATTGGATGAA
 CTTTTGAAAT TGGAGGGAAA TTTCCCTGAA GAAAATAATG ATAAAAAGTC TATCTATTAT
 TTAGGGGTCA CCTCA

  Submitted Frequency for ss8819815 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AFR1
MULTI-NATIONAL
48A=0.68800002
G=0.31200001
0.429 +/-0.071A/G=0.54200000
A/A=0.41700000
G/G=0.04100000
0.54208272003SNP500CANCER
HISP1
MULTI-NATIONAL
46G=0.54299998
A=0.45699999
0.496 +/-0.018A/G=0.56500000
G/G=0.26100001
A/A=0.17399999
0.56508272003SNP500CANCER
PAC1
MULTI-NATIONAL
48A=0.83300000
G=0.16700000
0.278 +/-0.101A/A=0.70800000
A/G=0.25000000
G/G=0.04200000
0.25008272003SNP500CANCER
P1
MULTI-NATIONAL
204A=0.58800000
G=0.41200000
0.485 +/-0.017A/G=0.45100001
A/A=0.36300001
G/G=0.18600000
0.45108272003SNP500CANCER
CAUC1
MULTI-NATIONAL
62G=0.58099997
A=0.41900000
0.487 +/-0.029A/G=0.45199999
G/G=0.35400000
A/A=0.19400001
0.45208272003SNP500CANCER


  dbSNP summary of Genotypes for ss8819815 back to top
No sufficient data to compute Hardy-weinberg probability for ss8819815.


  Submitted individual genotype for ss8819815 back to top
There is no individual genotype data for ss8819815.

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