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Submitted SNP(ss) Details: ss8820744           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004487.15_2736284
RefSNP(rs#)rs2227602
Submitted Batch IDCHRX_NA10470
Submitted DateJun 05, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 5 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHRX_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:XSNP55696-30b13.q1kposition:138quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8820744|allelePos=401|len=801|taxid=9606|alleles='G/A'|mol=Genomic
 CTCCTAAGAC CCACAGACTT TAGTGTCCAA GTTTCAAATA AGCACCGTAT ACCATCTTGA
 AGGGACTCAT GCCTCCCTAT TGATGAACTC TGCTTCCAAA GTGTGATCCA ACTTGAAGAA
 AGACTGTCAT GCAGCCAAGC CAAGGACAGA TTAAAGATCT AGTGTTTCCA TCCATGACTT
 GTCATAGCCC CAGAGGCCAA CAGTGATCAA TCAATCTATG ACATTTCATC TTATCATGCC
 CTACTTCCCT CCCACAAAAG GCAGTGGGGG GAAGGGGGTG GGAACTAAGT CACTGAGCTG
 AAATGATCCA TACTTCCCAG AGCCAGAAAA CACTCTCACG TCCTTGAGGC TTCTCTTGGC
 TTTCCTGGGC CCCTGGTCTC AATATACCAT CCTAGGCCCC
 R
 Tgcagtggct catgcttgta atcccagcac tttgggaagc caagtcaggc cgatcccttg
 aagtcaagag tttgaggcca ggcgcggtgg cttacgcctg taatcacagc actttgggag
 gccaaggcag gtggatcacg aggtcaggag ttcaagacta gcctggccaa catggtgaaa
 ccccatctct actaagaaga aaaaaaatta gccaggcatg gtgccggggg cctgtaatcc
 cagctactcg ggaggctgag gctgagaatt gcttgaaccc gggaggtaga ggttgcagtg
 agctgagatc gtgccactgc gctccagcct ggatgacaga gcgagactcc gtctcaaaaa
 aaaaaaaaaa aaagtttgag accagtctgg ccacgtggtg

  Submitted Frequency for ss8820744 back to top
There is no frequency submission for ss8820744.


  dbSNP summary of Genotypes for ss8820744 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-YRI112112G=0.77678573
A=0.22321428G/G=0.55357140
A/G=0.44642857
Pr(chiSq=1.834,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss8820744 back to top
There is no individual genotype data for ss8820744.

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