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Submitted SNP(ss) Details: ss8820751           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004668.15_9267054
RefSNP(rs#)rs6427699
Submitted Batch IDCHRX_NA10470
Submitted DateJun 05, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 5 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHRX_NA10470
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:XSNP55696-42m06.q1kposition:432quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8820751|allelePos=401|len=801|taxid=9606|alleles='G/A'|mol=Genomic
 GCACAAGAAA GCTGGAAGTT ATGTGTGGCA TTTTCAGAAT ACATGAAAGC TTCAACTCCA
 TGcagaacca cctgtataat atgtggagtt cagtgcaaaa taaaaatgca gggccccttg
 ttaaaaaaaa ttgcgagaat tttaatatgg cagcagcaga gaatcaaacc aagctcagca
 cccttctgat gtgggcacag ctcacaggtc catgaagcAA GGCTGAGCTC CATGTGAGAT
 CTGTCACTAT GGATTCTATG AGGTTAGTTT AAGTTACTCC ATGGAGGAAA CAGTAACTGT
 TCAAGAAAGA GGATATTTTT GGTCTGTCTG TGGATTTTAA CACGGGGAGT ACTCAAGGAT
 CTAAATGGAG TATTTCATAG GGGAGCTGGT ATCTGCTAAG
 R
 CAGGTCACTG GCTTCTGGGA AGAGATAGAA TTGTTGGCAT TATTAAAGCA TTGGTAGGGA
 GGACCCTGAG GCCCCATCAG AAGCAGACAA TGCCTAGAAA AGACACGGAT CCATGTAAGT
 CTTGATCTAC AGAGGACATA GACATGGACT CTCACCTGGG AGCTTGGGAG TGGCCTTGCT
 AATGCCAGGT TCTCTTAGAA TTGGAGCCCC AAGTATCTGA AGTATCCTGA ATCCAGTGCA
 ATGTTTATTT TAACATGAGA CCTTGGGTAA TAGAAAAAAA GTGTGGCCTG AGAAATAGGA
 GGTACACATA ACTAATCCCA GAAAAAAATG TGCATGATTG CATGATGGGA CACCTGGTCT
 CATTCTATAA ATAGAAGGTC CAGGCGGCAG CCTGGGCTTA

  Submitted Frequency for ss8820751 back to top
There is no frequency submission for ss8820751.


  dbSNP summary of Genotypes for ss8820751 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226G=0.52654868
A=0.47345132A/G=0.52212387
G/G=0.26548672
A/A=0.21238938
Pr(chiSq=0.252,df=1)
=0.655
Genotype
Freq.
HapMap-HCB
EAST ASIA
8484A=0.50000000A/G=0.47619048
A/A=0.26190478
G/G=0.26190478
Pr(chiSq=0.095,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172G=0.51744187
A=0.48255813A/G=0.36046511
G/G=0.33720931
A/A=0.30232558
Pr(chiSq=6.656,df=1)
=0.010
Genotype
Freq.
HapMap-YRI226226A=0.55309737
G=0.44690266A/G=0.52212387
A/A=0.29203540
G/G=0.18584071
Pr(chiSq=0.356,df=1)
=0.584
Genotype
Freq.
HAPMAP-ASW9898G=0.54081631
A=0.45918366A/G=0.59183675
G/G=0.24489796
A/A=0.16326530
Pr(chiSq=1.799,df=1)
=0.200
Genotype
Freq.
HAPMAP-CHB8282G=0.52439022
A=0.47560975A/G=0.65853661
G/G=0.19512194
A/A=0.14634146
Pr(chiSq=4.204,df=1)
=0.050
Genotype
Freq.
HAPMAP-CHD168168G=0.54761904
A=0.45238096A/G=0.57142860
G/G=0.26190478
A/A=0.16666667
Pr(chiSq=1.975,df=1)
=0.200
Genotype
Freq.
HAPMAP-GIH176176A=0.50000000A/G=0.45454547
A/A=0.27272728
G/G=0.27272728
Pr(chiSq=0.727,df=1)
=0.403
Genotype
Freq.
HAPMAP-LWK180180A=0.57222223
G=0.42777777A/G=0.47777778
A/A=0.33333334
G/G=0.18888889
Pr(chiSq=0.052,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100A=0.50999999
G=0.49000001A/G=0.54000002
A/A=0.23999999
G/G=0.22000000
Pr(chiSq=0.323,df=1)
=0.584
Genotype
Freq.
HAPMAP-MKK286286A=0.55594409
G=0.44405594A/G=0.53846157
A/A=0.28671327
G/G=0.17482518
Pr(chiSq=1.173,df=1)
=0.294
Genotype
Freq.
HAPMAP-TSI176176G=0.54545456
A=0.45454547A/G=0.52272725
G/G=0.28409091
A/A=0.19318181
Pr(chiSq=0.258,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss8820751 back to top
There is no individual genotype data for ss8820751.

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