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Submitted SNP(ss) Details: ss9808851           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDchr1.NT_004671.15_1025190
RefSNP(rs#)rs579732
Submitted Batch IDBaylor-WGS-200310
Submitted DateNov 05, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBAYLOR-WGS-200310
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality47306171 -312 59

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss9808851|allelePos=501|len=1001|taxid=9606|alleles='A/G'|mol=Genomic
 GCATCTGGCT TAAGAAACAT ATCCCTAGAT TTTGTTTAGA AATTGTGCTT TTTGGCTGGG
 TACGGTGGCT GAAGTCTGTA ATCCCAGCAT TTTGGGAGGC CGAGGTGGGC AGATCATGAG
 TCTGAGACCA GCCTGACCAA CATGGAGAAA GCCCATCTCT ACTAGAACTA CAAAATTAGC
 CGGGCGTGGT GGTGGTGCAT GCCTGTAATC CCAGCTACTG GGGAGGCTGA GGCAGGAGAA
 TCACTTGAAC CTGGGAGGCA GAAGTTGCAG TGAGCTGAGA TCGCATCATT GCACTCCAGC
 CTGGGCAACA AGAGCAAAAC TCCATCTCAA AAAAAAAAAA AAAAAAAAAA AAGAGAAAGA
 AAAAGAAATT GTGCTTTCTA ATGCATTCTT CTGAAAGTTT AAAGTATGCT TTTCAAATTT
 GGTTCTCACT TGAAGCTGAT ATTATTATAT AGTGTGACAT GTGGACTTAA TTTTAAACTT
 GTTTGTCTCT TTGTTTTTAC
 R
 AATTGGCACC AACTGTCCCC TAGACTTTAC TTAAGACTCA ATTATTCCTT CATTGTTCTG
 CAATACCAAG TCTGCTATAA TTAAGTTTTC ATATATGCGC AAGTCTGTTC CGGTGCTTTC
 TGCTCTGTTT CATTTATCAA TCTGTCCATT TGTTTGCCAG TTCCACGCTG TCTTAGTTAT
 TACAGATGTA ATTTGTATAG TAGTTGCATC CAGCTTGTTT TTCCTCTTAA AAAGCTTCTT
 GGGTATTCTC ATAAATTTCC TCTTTCATAC AAGACCACTT TGTCCTGTTT TTCAGAAAGA
 CACTCAAGAT TCAGATTAAA TTTACATTGT ATCTACTGAT TATGTTTGAG ATAATTAACA
 TATTTGATGT AGTGAATCTT CCTATATGTG ATCTTTAAAA CACTTTGGTC AAGTTTTATT
 ATATTCTTCA CTTATTGTTC TAATCTCCTC CCCAAGAATA CCTCAGTGTA GATATCTATT
 ATTTGTTCTT TGCAGTTGCT

  Submitted Frequency for ss9808851 back to top
There is no frequency submission for ss9808851.


  dbSNP summary of Genotypes for ss9808851 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.50000000A/G=0.43333334
A/A=0.28333333
G/G=0.28333333
Pr(chiSq=1.067,df=1)
=0.317
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.52222222
A=0.47777778A/G=0.55555558
G/G=0.24444444
A/A=0.20000000
Pr(chiSq=0.578,df=1)
=0.479
Genotype
Freq.
HapMap-JPT8888A=0.62500000
G=0.37500000A/G=0.47727272
A/A=0.38636363
G/G=0.13636364
Pr(chiSq=0.015,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120A=0.54166669
G=0.45833334A/G=0.44999999
A/A=0.31666666
G/G=0.23333333
Pr(chiSq=0.527,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss9808851 back to top
There is no individual genotype data for ss9808851.

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