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Submitted SNP(ss) Details: ss9808872           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDchr1.NT_077389.2_392668
RefSNP(rs#)rs540871
Submitted Batch IDBaylor-WGS-200310
Submitted DateNov 05, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBAYLOR-WGS-200310
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality54854936 223 33

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss9808872|allelePos=501|len=809|taxid=9606|alleles='A/G'|mol=Genomic
 TCTTATCTCC AAGCCCGAGC TGTAAGTAGC AACACTATTC TTTAGAAAGG CATTACATAT
 CTTGCATAAA TGAGAATCAG AGCTCCCCAT ACAATACTGC CACTGCCACT CTTCCTTGCA
 AATGCTCCTT TTAAGTCCAT ACGTTAAGAA TACCATTCTG GGCTGGGTAT GGTGGCTCAC
 GCCTGTAATC CCAGCACTCT GAGAGGCCGA GGCAAGCGGA TCACGAGGTC AAGTGTTTGA
 GACCAGCCTG GCCAATATGG TGAAACCCCA TCTCTACTAA AAAATACAAA AATTAGCCGA
 GCGTGGTGGC GGGCGCCTGT AGTCCCAGCT ACTTGGGAGG CTGAGGCAGG AGAATTGCTT
 GAACCCGGGA GGTGGAGGTT GCAGTGAGCC GAGATCGCAC CACTGCACTC CAGCCTGGGC
 GACAGAGCGA GACTCCGTCT CAAAAAAAAA AAAAAAAAAA AAAAAAACAA ATACAGCTCC
 ATGAAAGCAG GGACTTCCTC
 R
 GTCTTGTTAA TAACTCTATC TCTAGCACCA GACCAGAGCC TGGTACATAG TAGGCATACA
 TAATCATGTG TTGAGTACAT GAATGAATTA GTGATTGAAT GAATGAATTT TTTAAAATGC
 ACTGAACTGA ATGTCTCTGA AGACAGTGTA GGGCCCTCTG GTACCACAGA GGCTGTGTCA
 TGGGTCATGC CAGTACTCAC AAGAAATGTC AACGCTGGCA TACACTTCAC CAACAGGCAG
 ATATATCTGT AAGATGCAGG GGTAAGTTCA AGTGCTTCCA TGAGGCATTT CCGTAATTAA
 TTATTAGC

  Submitted Frequency for ss9808872 back to top
There is no frequency submission for ss9808872.


  dbSNP summary of Genotypes for ss9808872 back to top
No sufficient data to compute Hardy-weinberg probability for ss9808872.


  Submitted individual genotype for ss9808872 back to top
There is no individual genotype data for ss9808872.