NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss118438247           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000000033_NCBI36.1_chr1_747503
RefSNP(rs#)rs3115853
Submitted Batch IDILLUMINA_WTSI:NA18507_c1
Submitted DateJan 21, 2009
Publication Cited18987734
First entry to dbSNPJan 21 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss118438247|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 CTAGCGAGCA GATCCACCCT GTCTACTCTA CCTGCTTGTC CAGCAGGTCC ACCCTGTCTA
 CACTACCTGC CTGTCCAGCA AATCCACTCT GTCTACACTA CCTGGCTGTC CAGCAGATCC
 ACCCTGTCTA CACTACCTGC CTATCCAGCA GATCCACCCT GTCTATACTA CCTGCCTGTC
 TAGCAGATCC ACCCTGTCTA TACTACCTGC CCATCCAGCA GGTCCACCCT GTCTACACTA
 CCTCCCTGCC
 R
 AGTAGATCCA CCCTGTCTAC ACTACCTGCC TGGCCAGAAG ATCCACCCTG TCTACACTAC
 CTTCCTTGCC AGTAATGCAC GCTATCTACA CTACCTGCCT GGCTAGCAGA TCCACGCTGT
 CTATACTACC TCCCTGTCCA GTAGACCCAC CCTGTCTATA CTACCTCCCT GGCCAGCAGA
 TCCACCCTGT CTATACTACC TGCCTGGCCA GCAGATCCAC CCTGTCTATA CTACCTGACT
 GGCCAGCAGA

  Submitted Frequency for ss118438247 back to top
There is no frequency submission for ss118438247.


  dbSNP summary of Genotypes for ss118438247 back to top
No sufficient data to compute Hardy-weinberg probability for ss118438247.


  Submitted individual genotype for ss118438247 back to top
There is no individual genotype data for ss118438247.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement