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Submitted SNP(ss) Details: ss12580804           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr5.NT_006576.13_28409800
RefSNP(rs#)rs4492122
Submitted Batch IDWI-WGS-200306-A.2
Submitted DateJul 21, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 21 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P68917FH10.T0position:-604quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12580804|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 ctatggtgaa aaaggaaata tcttcagaga aaaactagaa agaagctttc tgagaactgc
 tttgtgtggt gtgcattcat cccacagagg taaacattaa acctatcttt agatggagca
 gtttagaaag actgtttttg tagaatctgt gaagagatat ttgggagcac attgaggtct
 ttgtgaaaac atgaaatatg ctgggagaaa accagaaata agttttctga gaaactgagt
 tgtaatgtgt gcatt
 M
 atctcacaga gttaaatgtt tcttttgatg gagcattttg gaaaaactgt tgttttagaa
 tctgtgaagg gatattttgg agtgcattga ggtctatggt gaaaaaggaa tatcttcaga
 tagtaactag aaagaagctt cttgggaaac tgatttgcag tgtgtgcatt catctcaaag
 agttaatcca ttcttttaat tgggtagttt ggaaacattg tttttgtaga aactgcatag
 tgatattagc gagTG

  Submitted Frequency for ss12580804 back to top
There is no frequency submission for ss12580804.


  dbSNP summary of Genotypes for ss12580804 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.58333331
C=0.41666666A/C=0.43333334
A/A=0.36666667
C/C=0.20000000
Pr(chiSq=0.707,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss12580804 back to top
There is no individual genotype data for ss12580804.

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