| Submitter | | Handle | SC_SNP | | Submitter SNP ID | NT_004321.15_1000684 | | RefSNP(rs#) | rs1175546 | | Submitted Batch ID | CHR1_Overlap_SNPs | | Submitted Date | Oct 22, 2003 | | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_004321
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_OVERLAP_SNPS | | Ascertainment Samplesize | 5 | | Population | N.D. |
| | Allele | | Observed Allele | C/T | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
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| Comment | | sequence:1dJ897I12-6a08.q1cposition:287quality:35sequence:1dJ897I12-5g09.q1nposition:177quality:42sequence:1dJ897I12-16h03.p1cposition:-133quality:35sequence:1dJ897I12-1f02.q1nposition:249quality:37 |
>gnl|dbSNP|ss12992560|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic GTTATTGGAG GGCTGAGGCT GCGCCTGCCC CAGGCCAGGT CCCGCCGAAA GCATCAAGTC
AGGTAAACAG GAGGGGCTGC GCCAGTCTTG GTAGGGAGGC AGACTCCACA TCATCCGCCT
TTGGGGCGAG CAGGCTCACT TGAGATCTGC CTGGGCCAGC CGGTGGCAGG TGGAGCTGCA
TGGCTGATTG CACACTGCCC
Y
AAGGCTCCTG GCTCCAAACC CAAGGAGGGA GCCCAAGGGC CTGTCCTGGG CTGCGGTCTG
AAGCAATGAT GCTTTCCTGG GAGCCTGTTG TTGGGTGGGC TGCTGCCTGC CCCAGCCCCA
TGACAGCCTG GATCTTCAAA AAGAGATCCC TACCTCTGAC CTGCCACTCC CAAGGAGGGA
AAGGAGTAGC CAGCTGGTAC
There is no frequency submission for ss12992560.
No sufficient data to compute Hardy-weinberg probability for ss12992560.
There is no individual genotype data for ss12992560.
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