Submitted SNP(ss) Details: ss161151689

Submitted SNP(ss) Details: ss161151689

Submitter
Handle	PERLEGEN
Submitter SNP ID	IVD00719921
RefSNP(rs#)	rs56298562
Submitted Batch ID	PGI_05_08-SEP-2009
Submitted Date	Sep 11, 2009
Publication Cited	[1] Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
First entry to dbSNP	Sep 11 2009 12:00:00:000AM

Resource Links
GenBank Accession	NC_000008.9
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	FLX_FLAP3
Ascertainment Samplesize	860
Population	PGI_05_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	T:Germline C:Germline
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TAGTGCACAC CTTCCAGTGC CTTCTGCATG TGGGGTGATA GCAGCAGCTC ACCCTCCTGC
 AGCAGAGCCT CAGCCTTGGG ACCTGAGGCC CCAGAGTGCA
 R
 GTGGCCGTGG CTGCAGAGGG TGCCCACAGA GGGGGCCACA TGACCTGCAC ATGCCCATCT
 GTCCTCCTCC TCCACCACCA CCTCCCTCTC CTCGGCATCC

Submitted Frequency for ss161151689

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PGI_05_PANEL - NORTH AMERICA	860				G/G=0.93720901 A/G=0.06279100 A/A=0.00000000 N/N=0.00000000		PGI_05_08-SEP-2009	PERLEGEN

dbSNP summary of Genotypes for ss161151689

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PGI_05_PANEL - NORTH AMERICA	860	860	G=0.96860462	A=0.03139535	G/G=0.93720931 A/G=0.06279070 A/A=0.00000000	Pr(chiSq=0.452,df=1) =0.527	Genotype Freq.

Submitted individual genotype for ss161151689

There is no individual genotype data for ss161151689.

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