NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss165860295           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA07022_36_chr1_224656456
RefSNP(rs#)rs1805407
Submitted Batch IDNA07022_snpassay_chr1
Submitted DateSep 28, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 28 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss165860295|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 AGGAAGAGCC TGTGTGGTGG GAGGGGGAGG GGGTACTGGA AACTCTTTGT TCTTTGCTTA
 CTTTTGCCAT GAACAAAAAT AAAGTATATT AAAAACAAAA CAACTTTAAA GGCTACATTC
 CAAGCACCTG GAAAAACAAA ATACCAAATA TCATGCAACA GATGATGCTG AGTCCAGGAG
 GTGTTGCTGA AATAACATGG GCACCATACG CTTGATCTGC ACATGTGGGA GAGGGCAAGC
 TGGGGGAGGT
 Y
 TGCTTTGCTC TCTGAGACGA GGCCCTCCTG GGAGCTTCAG GGTGGGGGCT GAATGCCCAT
 GCTGCCCCAG TATGTACACA CCTGTCACTC CTCCAGCTTC CGCTGTCTTC TTGACTTTCT
 GCTGGTCATC CCACCGAAGC TCAGAGAACC CATCCACCTC AACGTCAGGG TGCCGGATGG
 AGTGGCCCAC CTTCCAGAAG CAGGAGAAGT GGTACCAGTG TGGGACTTTT CCATCAAACA
 TGGGCGACTA

  Submitted Frequency for ss165860295 back to top
There is no frequency submission for ss165860295.


  dbSNP summary of Genotypes for ss165860295 back to top
No sufficient data to compute Hardy-weinberg probability for ss165860295.


  Submitted individual genotype for ss165860295 back to top
There is no individual genotype data for ss165860295.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement