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Submitted SNP(ss) Details: ss23434463           
Submitter
HandlePERLEGEN
Submitter SNP IDafd2103004
RefSNP(rs#)rs4986819
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23434463|allelePos=101|len=201|taxid=9606|alleles='G/C'|mol=Genomic
 TCAGTTCATG TGTATCACTG AAAATGAATT CAATCACATA CGGCATCTCA ATAGACATAG
 TCAAAGAGAA GCTAGCAAAA ATGAAGAG
 AAAGTTGTCT TA
 S
 TCTACGATCT TA
 AATTTCTATC TGAAATTATT TCAAACAATT CTAAATGGAA ATTTAAACCA GAAAACCAAT
 ATCCATTGAA TTGACAGGTT TTATATTT

  Submitted Frequency for ss23434463 back to top
There is no frequency submission for ss23434463.


  dbSNP summary of Genotypes for ss23434463 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4444G=0.84090906
C=0.15909091G/G=0.68181819
C/G=0.31818181
Pr(chiSq=0.231,df=1)
=0.655
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646G=0.78260869
C=0.21739130G/G=0.60869563
C/G=0.34782609
C/C=0.04347826
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848G=0.91666669
C=0.08333334G/G=0.83333331
C/G=0.16666667
Pr(chiSq=0.032,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23434463 back to top
There is no individual genotype data for ss23434463.