Submitted SNP(ss) Details: ss24237297

Submitted SNP(ss) Details: ss24237297

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0979262
RefSNP(rs#)	rs11807848
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCCTGTGCAG AAAGAGTCCT GGGTCCTCCG TCCTCTTCCA ACCTCCTGCT GAGAGTCCCA
 GGCAAGCACA GATTCCCAGG CTGGGGTA
 TCCCATCCAG AC
 Y
 TTCGCCCTCT GT
 ACCCTTCGTG CTGGGCCTGG GGTGGAGTGT ACTTGGAGGG GACCCATCCT CAATCCACCT
 CGTTCCGGAG AGCTGAGCCC TCAAGAAG

Submitted Frequency for ss24237297

There is no frequency submission for ss24237297.

dbSNP summary of Genotypes for ss24237297

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	T=0.62500000	C=0.37500000	C/T=0.50000000 T/T=0.37500000 C/C=0.12500000	Pr(chiSq=0.107,df=1) =0.752	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	T=0.71739131	C=0.28260869	C/T=0.47826087 T/T=0.47826087 C/C=0.04347826	Pr(chiSq=0.741,df=1) =0.403	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	T=0.66666669	C=0.33333334	T/T=0.45833334 C/T=0.41666666 C/C=0.12500000	Pr(chiSq=0.094,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24237297

There is no individual genotype data for ss24237297.

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