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Submitted SNP(ss) Details: ss37044430           
Submitter
HandleBROAD
Submitter SNP IDmt10550
RefSNP(rs#)rs28358280
Submitted Batch IDHapMap-SNP-2004-08-20
Submitted DateApr 25, 2005
Publication Cited[1] The International HapMap Project
First entry to dbSNPApr 25 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBROAD_ENCODE_PCR_RESEQ-2004-08-32C
Ascertainment Samplesize32
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 7
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss37044430|allelePos=312|len=575|taxid=9606|alleles='G/A'|mol=Genomic
 ACCTTCTTAT TATTTGATCT AGAAATTGCC CTCCTTTTAC CCCTACCATG AGCCCTACAA
 ACAACTAACC TGCCACTAAT AGTTATGTCA TCCCTCTTAT TAATCATCAT CCTAGCCCTA
 AGTCTGGCCT ATGAGTGACT ACAAAAAGGA TTAGACTGAN CNGAATTGGT ATATAGTTTA
 AACAAAACGA ATGATTTCGA CTCATTAAAT TATGATAATC ATATNTACCA AATGCCCCTC
 ATTTACATAA ATATTATACT AGCATTTACC ATCTCACTTC TAGGAATACT AGTATATCGC
 TCACACCTCA T
 R
 TCCTCCCTAC TATGCCTAGA AGGAATAATA CTATCGCTGT TCATTATAGC TACTCTCATA
 ACCCTCAACA CCCACTCCCT CTTAGCCAAT ATTGTGCCTA TTGCCATACT AGTCTTTGCC
 GCCTGCGAAG CAGCGGTNGG CCTAGCCCTA CTAGTCTCAA TCTCCAACAC ATATGGCCTA
 GACTACGTAC ATAACCTAAA CCTACTCCAA TGCTAAAACT AATCGTCCCA ACAATTATAT
 TACTACCACT GACATGACTN TCC

  Submitted Frequency for ss37044430 back to top
There is no frequency submission for ss37044430.


  dbSNP summary of Genotypes for ss37044430 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.96460176
G=0.03539823A/A=0.96460176
G/G=0.03539823
Pr(chiSq=105.283,df=1)
=0.001
Genotype
Freq.
HAPMAP-GIH176176A=0.98863637
G=0.01136364A/A=0.98863637
G/G=0.01136364
Pr(chiSq=86.023,df=1)
=0.001
Genotype
Freq.
HAPMAP-MKK286286A=0.97902095
G=0.02097902A/A=0.97902095
G/G=0.02097902
Pr(chiSq=137.126,df=1)
=0.001
Genotype
Freq.
HAPMAP-TSI176176A=0.90909094
G=0.09090909A/A=0.90909094
G/G=0.09090909
Pr(chiSq=73.455,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss37044430 back to top
There is no individual genotype data for ss37044430.

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