Submitted SNP(ss) Details: ss3754555

Submitted SNP(ss) Details: ss3754555

Submitter
Handle	SC_JCM
Submitter SNP ID	AC034136.6_2907
RefSNP(rs#)	rs2661837
Submitted Batch ID	21-SEP-2001d
Submitted Date	Sep 25, 2001
Publication Cited	[1] Clone overlap SNPs detected from the public human 19-Mar-2001 draft sequence [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Sep 25 2001 12:00:00:000AM

Resource Links
GenBank Accession	AC034136 AC040893
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	Overlap_SNPs_by_SsahaSNP
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/C
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
seqversion:AC034136.6position:2907unfin_quality:77seqversion:AC040893.1position:-159036unfin_quality:86

Fasta sequence (Legend)

 CTGGCCATGC TTCAGGCTTC TGATTCACCC ATACTTCCAG GAGCCATGAA TCTGAAATCT
 GGAGCTGGTC TGTAGAAAGC ATTCTATTTA GTGAAATGTT GAAGGAATTT TAGGTCAACT
 ATCATGTATT TCATTGTCTC CAATGCCATA ATTTCCAAGT GCCTACTTGA ACAGTAGATA
 CTTTCAGGGG ATTTTCATAT
 S
 AATGATTGCA TTTTGCCATT GTTCTTTATT TTTTCAGTAA TGCTCCATCT GTAAACAACC
 CAAATTTCAA AGCCTGACAT AGTGTATTGA CAAATTATTC CTGGATGCCT GTTTTTATCA
 GGCCAAAATC CATAGTTATT CTAAAATGGA TATCATACAA ATAATGCTGC TGTAGCATGC
 TAACATTTTC CAGACTATTA

Submitted Frequency for ss3754555

There is no frequency submission for ss3754555.

dbSNP summary of Genotypes for ss3754555

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-HCB - EAST ASIA	90	90	C=0.92222220	G=0.07777778	C/C=0.84444445 C/G=0.15555556	Pr(chiSq=0.048,df=1) =1.000	Genotype Freq.
HapMap-JPT	90	90	C=0.98888886	G=0.01111111	C/C=0.97777778 C/G=0.02222222	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss3754555

There is no individual genotype data for ss3754555.

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