Submitted SNP(ss) Details: ss38349835

Submitted SNP(ss) Details: ss38349835

Submitter
Handle	EGP_SNPS
Submitter SNP ID	PTEN-099655
RefSNP(rs#)	rs555895
Submitted Batch ID	PTEN-EGP_YORUB-060105
Submitted Date	Jul 07, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Jul 7 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ073384
Submitted Gene Name	PTEN
Submitted Gene ID	5728
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACAAAATGTT TCACTTTTGG GTAAATACAT TCTTCATACC AGGACCAGAG GAAACCTCAG
 AAAAAGTAGA AAATGGAAGT CTATGTGATC AAGAAATCGA TAGCATTTGC AGTATAGAGC
 GTGCAGATAA TGACAAGGAA TATCTAGTAC TTACTTTAAC AAAAAATGAT CTTGACAAAG
 CAAATAAAGA CAAAGCCAAC CGATACTTTT CTCCAAATTT TAAGGTCAGT TAAATTAAAC
 ATTTTGTGGG GGTTG
 K
 TGACTTGTAT GTATGTGATG TGTGTTTAAT TCTAGGAGTA CAGCTGATGA AGAACTTGCT
 TGACAAGTTT TTAACTTATG TATTATTTCG AAGCAGTGTT TACGTAGCAG TAACATGAAA
 GTTTCTAATA AAATACCCAA TGTACACAGC GTCAAAAAAG CTGCATTTTT CCTTTTCCTA
 ATTCTTTGTT GTTTGCTGAA ATCTGGGGCA AAGGTGCGGG AGGGGGCTAA ATGACTGGGA
 TATGAAGTAG GAATG

Submitted Frequency for ss38349835

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	42	G=0.52381003	T=0.47619000	PTEN-EGP_HISP-060105	EGP_SNPS
EGP_AD-PANEL	28		G=0.50000000 T=0.50000000	PTEN-EGP_AD-060105	EGP_SNPS
EGP_CEPH-PANEL	44	T=0.61363602	G=0.38636401	PTEN-EGP_CEPH-060105	EGP_SNPS
EGP_YORUB-PANEL	24	T=0.62500000	G=0.37500000	PTEN-EGP_YORUB-060105	EGP_SNPS
EGP_ASIAN-PANEL	48	T=0.52083302	G=0.47916701	PTEN-EGP_ASIAN-060105	EGP_SNPS

dbSNP summary of Genotypes for ss38349835

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	T=0.62500000	G=0.37500000	T/T=0.41666666 G/T=0.41666666 G/G=0.16666667	Pr(chiSq=0.148,df=1) =0.752	Genotype Freq.
EGP_HISP-PANEL	42	42	G=0.52380955	T=0.47619048	G/T=0.57142860 G/G=0.23809524 T/T=0.19047619	Pr(chiSq=0.444,df=1) =0.527	Genotype Freq.
EGP_CEPH-PANEL	44	44	T=0.61363637	G=0.38636363	G/T=0.40909091 T/T=0.40909091 G/G=0.18181819	Pr(chiSq=0.414,df=1) =0.527	Genotype Freq.
EGP_AD-PANEL	28	28		T=0.50000000	G/T=0.71428573 G/G=0.14285715 T/T=0.14285715	Pr(chiSq=2.571,df=1) =0.150	Genotype Freq.
EGP_ASIAN-PANEL	48	48	T=0.52083331	G=0.47916666	G/T=0.54166669 T/T=0.25000000 G/G=0.20833333	Pr(chiSq=0.174,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss38349835

There is no individual genotype data for ss38349835.

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