Submitted SNP(ss) Details: ss6263511

Submitted SNP(ss) Details: ss6263511

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_022184.9_401935
RefSNP(rs#)	rs4618082
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_022184.9
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:DHM45G03.G1POSITION:73QUALITY:28

Fasta sequence (Legend)

 TGTAACTTCT TGTATATATC ACCAGAAAAA AAGAATTGAA AATAATCGTC ACCCAGAAAA
 TCCAGAAAAC TGAAGATTTC ATCAGTTGGA AACAGTAGCA CTTTGAAAAC TTTTTAGGCC
 AGCTTTAATT TAATGGCCCT ACTGATATTC ACATCGAAGG TGACTAACAA TGACAAAGGC
 CTTATGAACT GTACAGACAA
 W
 ACAGAAGATT ATTCTTATCC TCATTGCATT TCTATGCATA TGCGTAAGAA CATTTTAAAG
 CCAAGAAAAT ATCTGTCAAA CCATTTCTGT TAGAACGATG TCAATTCATG CTTTTAATTT
 AGCATCAATA GAAAATTGCT GTAGGTAAAT CTCACATTTA TCTGCAACAA AATATAGATT
 TAATTTTTAG CTTAAACTTT

Submitted Frequency for ss6263511

There is no frequency submission for ss6263511.

dbSNP summary of Genotypes for ss6263511

No sufficient data to compute Hardy-weinberg probability for ss6263511.

Submitted individual genotype for ss6263511

There is no individual genotype data for ss6263511.

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